Pre_GI: BLASTP Hits

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Query: NC_008380:2210649:2229693 Rhizobium leguminosarum bv. viciae 3841, complete genome

Start: 2229693, End: 2230043, Length: 351

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:908500:9085689085689096681101Bradyrhizobium japonicum USDA 6, complete genomeDNA-damage-inducible protein4e-38156
NC_011004:4073916:4089353408935340905911239Rhodopseudomonas palustris TIE-1, complete genomeDNA-directed DNA polymerase5e-36149
NC_017150:255474:2671062671062681851080Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA polymerase IV1e-32138
NC_003276:252217:272250272250272609360Nostoc sp. PCC 7120 plasmid pCC7120alpha, complete sequencehypothetical protein6e-32135
NC_010655:1606901:1606901160690116079801080Akkermansia muciniphila ATCC BAA-835, complete genomeDNA-directed DNA polymerase7e-31132
NC_008262:1721496:1724602172460217256811080Clostridium perfringens SM101, complete genomeDNA polymerase IV4e-30129
NC_015160:1697125:1712090171209017131811092Odoribacter splanchnicus DSM 20712 chromosome, complete genomeDNA polymerase IV2e-29127
NC_015311:24071:2407124071251501080Prevotella denticola F0289 chromosome, complete genomeDNA polymerase IV2e-27120
NC_014032:1972623:1980243198024319813641122Salinibacter ruber M8 chromosome, complete genomeDNA polymerase IV7e-27119
NC_007677:1911109:1916857191685719179781122Salinibacter ruber DSM 13855, complete genomeputative DNA polymerase IV1e-26118
NC_011761:2344408:2358296235829623594321137Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA polymerase IV1e-26118
NC_011206:2239109:2252997225299722541331137Acidithiobacillus ferrooxidans ATCC 53993, complete genomeDNA-directed DNA polymerase1e-26118
NC_011206:1379068:1388245138824513893691125Acidithiobacillus ferrooxidans ATCC 53993, complete genomeDNA-directed DNA polymerase2e-26117
NC_015850:110364:1553561553561564771122Acidithiobacillus caldus SM-1 chromosome, complete genomeDNA polymerase IV4e-26116
NC_015850:1947000:1960375196037519614961122Acidithiobacillus caldus SM-1 chromosome, complete genomeDNA polymerase IV5e-26116
NC_020291:4903981:4908112490811249091581047Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA polymerase IV5e-26116
NC_013162:811763:8142958142958153561062Capnocytophaga ochracea DSM 7271, complete genomeDNA-directed DNA polymerase8e-26115
NC_015942:1711026:1712945171294517141441200Acidithiobacillus ferrivorans SS3 chromosome, complete genomeDNA polymerase IV3e-25113
NC_014752:1391615:1391615139161513926731059Neisseria lactamica ST-640, complete genomeimpB/mucB/samB family protein1e-24112
NC_008767:1363288:1382716138271613837741059Neisseria meningitidis FAM18, complete genomeimpB/mucB/samB family protein8e-25112
NC_010718:2460893:2477367247736724785931227Natranaerobius thermophilus JW/NM-WN-LF, complete genomeDNA-directed DNA polymerase2e-24110
NC_017511:852260:8543458543458554511107Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeDNA polymerase IV3e-24110
NC_011035:933269:9373849373849384901107Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeDNA polymerase IV3e-24110
NC_009633:4308016:4324707432470743258101104Alkaliphilus metalliredigens QYMF chromosome, complete genomeDNA polymerase IV8e-24108
NC_015496:1590674:1605169160516916062811113Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeDNA-directed DNA polymerase4e-23106
NC_004547:3866439:3888324388832438893821059Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDNA polymerase IV1e-22105
NC_015711:4811349:4814731481473148159391209Myxococcus fulvus HW-1 chromosome, complete genomeputative DNA polymerase IV1e-22104
NC_020260:3004500:3024509302450930255641056Cronobacter sakazakii Sp291, complete genomeDNA polymerase IV4e-22103
NC_018750:1092224:1092224109222410935761353Streptomyces venezuelae ATCC 10712, complete genomeDNA polymerase IV5e-22102
NC_006448:1451729:1468248146824814693511104Streptococcus thermophilus LMG 18311, complete genomeDNA polymerase IV8e-22102
NC_014307:1619000:1638897163889716399851089Ralstonia solanacearum CFBP2957 chromosome, complete genomeDNA polymerase iv, devoid of proofreading, damage-inducible protein p1e-21101
NC_020063:3690308:3750963375096337520181056Enterobacteriaceae bacterium strain FGI 57, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair1e-21101
NC_014393:3425694:3442356344235634434171062Clostridium cellulovorans 743B chromosome, complete genomeDNA-directed DNA polymerase3e-21100
NC_012925:191501:1915011915011925681068Streptococcus suis P1/7, complete genomeDNA polymerase IV3e-21100
NC_010611:208268:2320192320192330741056Acinetobacter baumannii ACICU, complete genomeNucleotidyltransferase/DNA polymerase4e-21100
NC_014803:709000:7120577120577131181062Pseudoalteromonas sp. SM9913 chromosome chromosome I, completeDNA polymerase IV1e-2098.6
NC_009749:937412:9527919527919538401050Francisella tularensis subsp. holarctica FTA, complete genomeDNA polymerase IV, devoid of proofreading,damage inducible protein P7e-2095.9
NC_007880:935670:9510439510439520921050Francisella tularensis subsp. holarctica, complete genomeDNA polymerase IV, devoid of proofreading,damage inducible protein P7e-2095.9
NC_008369:939356:9547329547329557811050Francisella tularensis subsp. holarctica OSU18, complete genomeDNA-directed DNA polymerase7e-2095.9
NC_010634:1056441:1062556106255610636141059Yersinia pseudotuberculosis PB1/+, complete genomeDNA-repair protein1e-1995.1
NC_006155:1074298:1080413108041310814711059Yersinia pseudotuberculosis IP 32953, complete genomeDNA polymerase IV1e-1995.1
NC_010465:3597000:3609473360947336105311059Yersinia pseudotuberculosis YPIII, complete genomeDNA-directed DNA polymerase1e-1995.1
NC_009708:3542336:3555616355561635566741059Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeDNA polymerase IV1e-1995.1
NC_003911:3453764:3478224347822434794861263Silicibacter pomeroyi DSS-3, complete genomeDNA polymerase IV1e-1995.1
NC_004088:1075454:1080763108076310818331071Yersinia pestis KIM, complete genomeDNA polymerase IV1e-1995.1
NC_017154:3576256:3589537358953735906071071Yersinia pestis D106004 chromosome, complete genomeDNA polymerase IV1e-1995.1
NC_008150:3015000:3028427302842730294851059Yersinia pestis Antiqua, complete genomeDNA-damage-inducible protein P1e-1994.7
NC_010159:3502350:3515659351565935167171059Yersinia pestis Angola, complete genomeDNA polymerase IV1e-1994.7
NC_008149:1002453:1007774100777410088321059Yersinia pestis Nepal516, complete genomeDNA-damage-inducible protein P1e-1994.7
NC_003143:3583468:3596749359674935978071059Yersinia pestis CO92, complete genomeDNA polymerase IV1e-1994.7
NC_005810:754340:7605117605117615691059Yersinia pestis biovar Microtus str. 91001, complete genomeDNA polymerase IV1e-1994.7
NC_009381:3228500:3241013324101332420711059Yersinia pestis Pestoides F chromosome, complete genomeDNA polymerase IV1e-1994.7
NC_014029:3633955:3647236364723636482941059Yersinia pestis Z176003 chromosome, complete genomeDNA polymerase IV1e-1994.7
NC_017160:3560153:3573434357343435744921059Yersinia pestis D182038 chromosome, complete genomeDNA polymerase IV1e-1994.7
NC_017168:2158839:2164160216416021652181059Yersinia pestis A1122 chromosome, complete genomeDNA polymerase IV1e-1994.7
NC_014532:2298628:2319498231949823205441047Halomonas elongata DSM 2581, complete genomeDNA polymerase IV1e-1994.7
NC_015385:1122794:1141569114156911427861218Treponema succinifaciens DSM 2489 chromosome, complete genomeDNA polymerase IV1e-1994.7
NC_015496:1857900:1873313187331318745331221Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeDNA-directed DNA polymerase3e-1994
NC_017265:3375463:3389089338908933901471059Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA polymerase IV3e-1994
NC_011146:1998981:2024621202462120258501230Geobacter bemidjiensis Bem, complete genomeUMUC domain protein DNA-repair protein3e-1993.6
NC_015730:3853065:3875738387573838769911254Roseobacter litoralis Och 149 chromosome, complete genomeDNA polymerase IV4e-1993.6
NC_015733:2194676:2205840220584022072641425Pseudomonas putida S16 chromosome, complete genomeDNA-directed DNA polymerase5e-1993.2
NC_015914:111382:1261001261001272901191Cyclobacterium marinum DSM 745 chromosome, complete genomeDNA polymerase IV6e-1992.8
NC_012918:2896671:2914646291464629158751230Geobacter sp. M21 chromosome, complete genomeDNA-directed DNA polymerase7e-1992.4
NC_013169:1410384:1413127141312714145031377Kytococcus sedentarius DSM 20547, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair5e-1889.7
NC_013939:441921:4585084585084597101203Deferribacter desulfuricans SSM1, complete genomeDNA polymerase IV9e-1889
NC_009654:4253431:4261488426148842625461059Marinomonas sp. MWYL1, complete genomeDNA-directed DNA polymerase9e-1889
NC_019977:253895:2680762680762691581083Methanomethylovorans hollandica DSM 15978, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair1e-1788.6
NC_002939:47406:5200052000532411242Geobacter sulfurreducens PCA, complete genomeImpB/MucB/SamB family protein2e-1788.2
NC_014041:661352:6778776778776790791203Zunongwangia profunda SM-A87 chromosome, complete genomeDNA polymerase IV3e-1787.4
NC_008609:1976403:2051262205126220524971236Pelobacter propionicus DSM 2379, complete genomeDNA-directed DNA polymerase8e-1785.9
NC_013791:2839516:2849576284957628508201245Bacillus pseudofirmus OF4 chromosome, complete genomeDNA polymerase IV2e-1684.7
NC_009952:366959:3669593669593682121254Dinoroseobacter shibae DFL 12, complete genomeDNA-directed DNA polymerase IV3e-1684
NC_014655:614874:6221506221506233071158Leadbetterella byssophila DSM 17132 chromosome, complete genomeDNA-directed DNA polymerase3e-1683.6
NC_013165:2440883:2454883245488324561811299Slackia heliotrinireducens DSM 20476, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair5e-1683.2
NC_016627:2524307:2549544254954425507311188Clostridium clariflavum DSM 19732 chromosome, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair8e-1682.4
NC_009441:4449500:4464745446474544659291185Flavobacterium johnsoniae UW101 chromosome, complete genomeDNA-directed DNA polymerase2e-1581.3
NC_016627:2593242:2598735259873525999761242Clostridium clariflavum DSM 19732 chromosome, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair3e-1477
NC_014039:1766049:1778373177837317797701398Propionibacterium acnes SK137 chromosome, complete genomeImpB/MucB/SamB family protein5e-1476.3
NC_014550:2355500:2365016236501623661821167Arthrobacter arilaitensis Re117, complete genomeputative DNA polymerase IV9e-1475.5
NC_014628:252500:2678282678282690661239Paenibacillus polymyxa SC2 plasmid pSC2, complete sequenceDNA polymerase IV 21e-1375.1
NC_016516:1751336:1767233176723317686301398Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeDNA polymerase IV3e-1373.9
NC_018704:896209:8992168992169004451230Amphibacillus xylanus NBRC 15112, complete genomeputative UmuC-like protein7e-1269.3
NC_009437:685214:6852146852146864491236Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeDNA-directed DNA polymerase3e-1167.4
NC_016943:4799915:4819788481978848212181431Blastococcus saxobsidens DD2, complete genomeDNA polymerase IV6e-1166.2
NC_003450:2244862:2266895226689522682981404Corynebacterium glutamicum ATCC 13032, complete genomeDNA polymerase IV2e-1064.3
NC_020388:1428042:1441532144153214427971266Natronomonas moolapensis 8.8.11 complete genomeDNA-directed DNA polymerase Y2e-0960.8
NC_014212:319815:3299803299803311971218Meiothermus silvanus DSM 9946 chromosome, complete genomeDNA-directed DNA polymerase3e-0960.5
NC_015737:664999:6822406822406834481209Clostridium sp. SY8519, complete genomehypothetical protein1e-0755.1
NC_015687:303810:3246003246003257901191Clostridium acetobutylicum DSM 1731 chromosome, complete genomeDNA-damage repair protein, dinP/uvrX1e-0755.1
NC_003030:303812:3246033246033257931191Clostridium acetobutylicum ATCC 824, complete genomeDNA-damage repair protein, dinP/uvrX ortholog1e-0755.1
NC_013730:6791311:6805463680546368067281266Spirosoma linguale DSM 74, complete genomeDNA-directed DNA polymerase4e-0753.5
NC_007517:1792000:180873618087361808948213Geobacter metallireducens GS-15, complete genome4e-0753.1
NC_007907:3872805:3888602388860238898551254Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0650.4
NC_007759:1028977:105912410591241059435312Syntrophus aciditrophicus SB, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair5e-0650.1
NC_011146:603429:6067086067086079611254Geobacter bemidjiensis Bem, complete genomeUMUC domain protein DNA-repair protein7e-0649.3
NC_017167:2298962:2345720234572023469761257Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA-directed DNA polymerase9e-0648.9