Pre_GI: BLASTP Hits

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Query: NC_008268:3162824:3164996 Rhodococcus sp. RHA1, complete genome

Start: 3164996, End: 3166603, Length: 1608

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family5e-29129
NC_015573:813000:839785839785840549765Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIclR family transcriptional regulator7e-27122
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator8e-2099
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator3e-1997.1
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR1e-1895.1
NC_011725:2949519:296142429614242962176753Bacillus cereus B4264 chromosome, complete genomeIclR family transcriptional regulator7e-1892.4
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family2e-1791.3
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-1790.9
NC_014500:2589089:259686025968602597651792Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein KdgR7e-1789.4
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family7e-1789.4
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR1e-1688.2
NC_013757:3012130:301834030183403019140801Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, IclR family1e-1688.2
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator4e-1686.7
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator7e-1685.9
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21371e-1585.5
NC_012912:2216749:223158522315852232376792Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family1e-1585.1
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-1584.7
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family2e-1584.3
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI2e-1584.3
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-1584
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator2e-1584
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family3e-1583.6
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator4e-1583.2
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator1e-1482
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator1e-1482
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator2e-1480.9
NC_008699:2260606:228254222825422283318777Nocardioides sp. JS614, complete genomeregulatory proteins, IclR3e-1480.5
NC_013967:1967896:197330819733081974072765Haloferax volcanii DS2 chromosome, complete genomeArcR family transcription regulator4e-1480.1
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family4e-1480.1
NC_009468:38112:599365993660745810Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceregulatory protein, IclR5e-1479.7
NC_016943:1560000:156831215683121569094783Blastococcus saxobsidens DD2, complete genomeIclR family transcriptional regulator9e-1479
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family2e-1377.8
NC_018870:484000:489181489181489951771Thermacetogenium phaeum DSM 12270 chromosome, complete genomeHTH-type transcriptional regulator3e-1377.4
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family3e-1377
NC_009921:3384116:340073634007363401452717Frankia sp. EAN1pec, complete genometranscriptional regulator, IclR family2e-1274.7
NC_012522:7837071:784713078471307848002873Rhodococcus opacus B4, complete genomeputative IclR family transcriptional regulator2e-1274.7
NC_010997:830500:836841836841837644804Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative transcriptional regulator protein, IclR family2e-1274.3
NC_009655:1626466:163827816382781639075798Actinobacillus succinogenes 130Z chromosome, complete genometranscriptional regulator IclR5e-1273.2
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator5e-1272.8
NC_016584:593954:606783606783607556774Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator6e-1272.8
CP002797:4603787:461008346100834610847765Escherichia coli NA114, complete genomePutative transcriptional regulator, IclR family2e-1171.6
NC_018581:759932:768443768443769318876Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator1e-1171.6
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator1e-1171.6
NC_007005:2686551:271373727137372714576840Pseudomonas syringae pv. syringae B728a, complete genomeregulatory proteins, IclR1e-1171.6
NC_008010:105665:110677110677111552876Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family1e-1171.6
NC_015379:2505233:251805125180512518803753Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, IclR family2e-1171.2
NC_013743:505842:527387527387528151765Haloterrigena turkmenica DSM 5511, complete genometranscriptional regulator, IclR family2e-1170.9
NC_005773:3253575:327876932787693279608840Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, IclR family3e-1170.9
NC_004460:973738:987891987891988673783Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator4e-1170.1
NC_016048:308342:343421343421344185765Oscillibacter valericigenes Sjm18-20, complete genomeputative IclR family transcriptional regulator4e-1170.1
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family4e-1170.1
NC_008391:2404443:242209824220982422985888Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, IclR family5e-1169.7
NC_021171:1661923:168295816829581683677720Bacillus sp. 1NLA3E, complete genomeIclR family transcriptional regulator8e-1169.3
NC_014550:1581812:163452816345281635253726Arthrobacter arilaitensis Re117, complete genomeIclR family transcriptional regulator7e-1169.3
NC_018000:1852691:187154618715461872355810Sinorhizobium fredii USDA 257 chromosome, complete genomeacetate operon repressor9e-1168.9
NC_014836:312353:329289329289330101813Desulfurispirillum indicum S5 chromosome, complete genomeregulatory protein IclR1e-1068.6
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator2e-1067.8
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region5e-1066.6
NC_015067:2136048:213784721378472138722876Bifidobacterium longum subsp. longum JCM 1217, complete genometranscriptional regulator4e-1066.6
NC_007953:938346:955359955359956207849Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, IclR family4e-1066.6
NC_010718:2860096:287722228772222877980759Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family4e-1066.6
NC_009483:1636189:165581316558131656577765Geobacter uraniireducens Rf4 chromosome, complete genomeregulatory protein IclR4e-1066.6
NC_018581:3646489:365874036587403659486747Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator6e-1066.2
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator6e-1066.2
NC_015944:10500:256442564426579936Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencetranscription regulator5e-1066.2
NC_015052:2181514:218331321833132184188876Bifidobacterium longum subsp. infantis 157F, complete genometranscriptional regulator5e-1066.2
NC_014656:1829336:186474318647431865618876Bifidobacterium longum subsp. longum BBMN68 chromosome, completeiclr-type transcriptional regulator5e-1066.2
NC_013457:1703201:170404717040471704781735Vibrio sp. Ex25 chromosome 2, complete genometranscriptional regulator7e-1065.9
NC_005139:518760:535254535254536063810Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator8e-1065.9
NC_016943:4194002:419849841984984199286789Blastococcus saxobsidens DD2, complete genomeputative HTH-type transcriptional repressor allR1e-0965.1
NC_019962:1750497:186400218640021864754753Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator1e-0965.1
NC_013745:371322:372414372414373184771Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completetranscriptional regulator, IclR family1e-0965.1
NC_009792:4693152:471779447177944718549756Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0965.1
NC_014306:4106569:410656941065694107372804Erwinia billingiae Eb661, complete genomeTranscription regulator1e-0964.7
NC_017955:3057592:306076030607603061566807Modestobacter marinus, complete genomeIclR family transcriptional regulator2e-0964.7
NC_014666:1601972:160197216019721602739768Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, IclR family2e-0964.7
NC_008146:1748026:175758017575801758473894Mycobacterium sp. MCS, complete genometranscriptional regulator, IclR family2e-0964.3
NC_009077:1687304:169721316972131698106894Mycobacterium sp. JLS, complete genomeregulatory proteins, IclR2e-0964.3
NC_008705:1752180:176173417617341762627894Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR2e-0964.3
NC_016590:1183470:118606511860651186964900Burkholderia sp. YI23 chromosome 3, complete sequenceIclR family transcriptional regulator2e-0964.3
NC_020302:146807:162161162161162958798Corynebacterium halotolerans YIM 70093 = DSM 44683, completeIclR family transcriptional regulator3e-0963.5
NC_020209:397376:398832398832399611780Pseudomonas poae RE*1-1-14, complete genomeputative regulatory protein4e-0963.5
NC_008726:494769:503943503943504749807Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR5e-0963.2
NC_007951:925442:941759941759942712954Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family5e-0963.2
NC_013093:4890557:490830549083054909054750Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, IclR family7e-0962.8
NC_015957:5310000:532864653286465329404759Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator7e-0962.8
NC_008596:3404832:341244134124413413250810Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, IclR family protein, putative9e-0962.4
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family9e-0962.4
NC_016947:1480282:148352714835271484252726Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein, IclR7e-0962.4
NC_011001:163813:181278181278182174897Burkholderia cenocepacia J2315 chromosome 2, complete sequencetranscriptional regulator KdgR7e-0962.4
NC_014814:132404:141615141615142415801Mycobacterium sp. Spyr1 chromosome, complete genomeTranscriptional regulator PhtR1e-0862
NC_009338:686932:705973705973706773801Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR2e-0861.6
NC_014532:2298628:230572923057292306538810Halomonas elongata DSM 2581, complete genometranscriptional regulator KdgR2e-0861.2
NC_006513:1949751:196276819627681963598831Azoarcus sp. EbN1, complete genometranscriptional regulatory protein2e-0861.2
NC_019974:1184871:123228012322801233062783Natronococcus occultus SP4, complete genometranscriptional regulator2e-0861.2
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family4e-0860.5
NC_014318:381384:400659400659401450792Amycolatopsis mediterranei U32 chromosome, complete genomeIclR family transcriptional regulator4e-0860.1
NC_011894:3161289:317979031797903180635846Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, IclR family4e-0860.1
NC_008726:4725389:473456147345614735364804Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR5e-0859.7
NC_010473:247429:2617322617322639362205Escherichia coli str. K-12 substr. DH10B, complete genome5e-0859.7
NC_009142:1701000:171626517162651717011747Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, IclR family8e-0859.3
NC_014299:82584:117884117884118654771Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceArcR family transcription regulator9e-0858.9
NC_019974:3013338:301888230188823019688807Natronococcus occultus SP4, complete genometranscriptional regulator1e-0758.9
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family1e-0758.5
NC_014039:2320307:233734123373412338105765Propionibacterium acnes SK137 chromosome, complete genometranscriptional regulator, IclR family, C-terminal domain protein2e-0758.2
NC_006085:2384892:240191124019112402675765Propionibacterium acnes KPA171202, complete genometranscriptional regulator (IclR family)2e-0758.2
NC_016511:2321999:234027323402732341037765Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeIclR family transcriptional regulator2e-0758.2
NC_016512:2322598:233961523396152340379765Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeIclR family transcriptional regulator2e-0758.2
NC_016516:2314115:233113123311312331895765Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeIclR family transcriptional regulator2e-0758.2
NC_010718:1229355:122935512293551230158804Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family2e-0758.2
NC_015684:3157941:315886331588633159612750Oligotropha carboxidovorans OM5 chromosome, complete genomeIclR family transcriptional regulator2e-0758.2
NC_015381:4182194:419460441946044195383780Burkholderia gladioli BSR3 chromosome 1, complete sequenceIclR family transcriptional regulator1e-0758.2
NC_008010:105665:109770109770110609840Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family2e-0757.8
NC_017186:361444:400705400705401463759Amycolatopsis mediterranei S699 chromosome, complete genomeIclR family transcriptional regulator3e-0757.4
NC_013744:462520:469728469728470492765Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completetranscriptional regulator, IclR family4e-0757
NC_007650:832507:851070851070851981912Burkholderia thailandensis E264 chromosome II, complete sequencetranscriptional regulator, IclR family, putative4e-0757
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator3e-0757
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass7e-0756.2
NC_016582:3563156:357822535782253578947723Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscriptional regulator6e-0756.2
NC_014623:1633889:163496616349661635784819Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscriptional regulator6e-0756.2
NC_020911:3159290:317696631769663177724759Octadecabacter antarcticus 307, complete genomeIclR family transcriptional regulator6e-0756.2
NC_019673:8114376:812535081253508126270921Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, IclR family6e-0756.2
NC_010524:4788753:480841648084164809255840Leptothrix cholodnii SP-6, complete genometranscriptional regulator, IclR family6e-0756.2
NC_006395:161455:169885169885170700816Haloarcula marismortui ATCC 43049 plasmid pNG700, completetranscription regulator5e-0756.2
NC_009338:603663:622995622995623876882Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR7e-0755.8
NC_016884:2701217:271982827198282720604777Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeIclR family transcriptional regulator1e-0655.5
NC_014217:3024961:303152430315243032288765Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, IclR family1e-0655.1
NC_019974:3083899:309096730909673091740774Natronococcus occultus SP4, complete genometranscriptional regulator1e-0655.1
NC_015850:2451957:247369824736982474504807Acidithiobacillus caldus SM-1 chromosome, complete genomeIclR family transcriptional regulator2e-0654.7
NC_016860:4024000:403866040386604039412753Salmonella enterica subsp. enterica serovar Typhimurium strputative HTH-type transcriptional regulator yfaX2e-0654.7
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR2e-0654.3
NC_015458:2614108:263205226320522632963912Pusillimonas sp. T7-7 chromosome, complete genomeputative transcriptional regulator2e-0654.3
NC_015591:1161007:117147111714711172313843Sinorhizobium meliloti AK83 chromosome 3, complete sequenceIclR family transcriptional regulator2e-0654.3
NC_008043:499399:513488513488514279792Silicibacter sp. TM1040 mega plasmid, complete sequencetranscriptional regulator, IclR family2e-0654.3
NC_013729:4871430:488413648841364884891756Kribbella flavida DSM 17836, complete genometranscriptional regulator, IclR family3e-0653.9
NC_015724:129331:143518143518144267750Cupriavidus necator N-1 plasmid BB2p, complete sequenceIclR family transcriptional regulator3e-0653.9
NC_016604:3184855:322144832214483222197750Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator3e-0653.9
NC_013202:906044:909580909580910356777Halomicrobium mukohataei DSM 12286, complete genometranscriptional regulator, IclR family3e-0653.9
NC_007963:317291:334985334985335767783Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family3e-0653.9
NC_016604:3137694:314993631499363150736801Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator4e-0653.5
NC_015957:196000:217055217055217780726Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator4e-0653.1
NC_016745:1472000:147512614751261475890765Oceanimonas sp. GK1 chromosome, complete genomeputative IclR family transcriptional regulator5e-0653.1
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein6e-0652.8
NC_006087:28490:625956259563383789Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, IclR family7e-0652.8