Pre_GI Gene

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Host: NC_008043 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008043:499399 Silicibacter sp. TM1040 mega plasmid, complete sequence

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
498896499402507Ureidoglycolate hydrolaseQuickGO ontologyBLASTP
4993995008141416polysaccharide deacetylaseQuickGO ontologyBLASTP
501014501370357TransthyretinQuickGO ontologyBLASTP
501443502357915transcriptional regulator LysR familyQuickGO ontologyBLASTP
5024675037261260protein of unknown function DUF989QuickGO ontologyBLASTP
5038025051871386amidohydrolaseQuickGO ontologyBLASTP
505993507447145516S ribosomal RNAQuickGO ontologyBLASTP
50758750766377tRNA-IleQuickGO ontology
50772950780476tRNA-AlaQuickGO ontologyBLASTP
508349511192284423S ribosomal RNAQuickGO ontologyBLASTP
5114305115441155S ribosomal RNAQuickGO ontologyBLASTP
51159651167277tRNA-MetQuickGO ontology
511757512116360response regulator receiver proteinQuickGO ontologyBLASTP
5123745134321059ABC transporter relatedQuickGO ontologyBLASTP
513488514279792transcriptional regulator IclR familyQuickGO ontologyBLASTP
5144205156731254extracellular solute-binding protein family 1QuickGO ontologyBLASTP
515908516735828binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
516735517583849binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
5175805196462067glycoside hydrolase clan GH-DQuickGO ontologyBLASTP
5196435213581716Dihydroxy-acid dehydrataseQuickGO ontologyBLASTP
521360522130771short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
5221275230419152-keto-3-deoxy-galactonokinaseQuickGO ontologyBLASTP