Pre_GI Gene

Some Help

Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:845164 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8451648462311068UDP-N-acetylglucosamine--N-acetylmuramyl- pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurGQuickGO ontologyBLASTP
846338846811474competence protein ComEA helix-hairpin-helix repeat regionQuickGO ontologyBLASTP
8469128488491938threonine--tRNA ligase ThrSQuickGO ontologyBLASTP
848950849204255hypothetical proteinBLASTP
849387850199813putative hydrolase YutFQuickGO ontologyBLASTP
850368850937570glycerol-3-phosphate responsive antiterminator GlpPQuickGO ontologyBLASTP
851079851621543DJ-1 family proteinQuickGO ontologyBLASTP
851861852637777pectin degradation repressor protein KdgRQuickGO ontologyBLASTP
852707853351645KHGKDPG aldolase KdgAQuickGO ontologyBLASTP
8534098545091101PfkB domain proteinQuickGO ontologyBLASTP
8550918563171227transposase for insertion sequence element IS905QuickGO ontologyBLASTP
856783856899117hypothetical protein
858599858778180hypothetical protein
8620598661054047carbamoyl-phosphate synthase large chainQuickGO ontologyBLASTP
8660928671891098carbamoyl-phosphate synthase small chainQuickGO ontologyBLASTP
8672148686291416amidophosphoribosyltransferase PurFQuickGO ontologyBLASTP