Pre_GI: BLASTN Hits

Some Help

Query: NC_004578:1719849 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1719849, End: 1742217, Length: 22369

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015942:72298072298074620423225Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_016047:637778*63777866096423187Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete6e-32147BLASTN svgBLASTP svg
NC_005363:35622053562205359309930895Bdellovibrio bacteriovorus HD100, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008061:27736702773670279999926330Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_008543:24740022474002249449920498Burkholderia cenocepacia HI2424 chromosome 2, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_010515:19009671900967192454423578Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_010087:31906331906336759948537Burkholderia multivorans ATCC 17616 chromosome 3, complete2e-1385.7BLASTN svgBLASTP svg
NC_010801:55027055027059663446365Burkholderia multivorans ATCC 17616 chromosome 3, complete2e-1385.7BLASTN svgBLASTP svg
NC_010625:14656031465603148359917997Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence2e-28135BLASTN svgBLASTP svg
NC_010681:12164712164714763125985Burkholderia phytofirmans PsJN chromosome 1, complete sequence4e-1177.8BLASTN svgBLASTP svg
NC_010338:3743000*3743000380073857739Caulobacter sp. K31, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010995:2547164*2547164256843021267Cellvibrio japonicus Ueda107, complete genome8e-19103BLASTN svgBLASTP svg
NC_015563:47734154773415479788824474Delftia sp. Cs1-4 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012796:12950012950014715917660Desulfovibrio magneticus RS-1, complete genome2e-25125BLASTN svgBLASTP svg
NC_020181:1653261*1653261168347330213Enterobacter aerogenes EA1509E, complete genome5e-26127BLASTN svgBLASTP svg
NC_020181:10574761057476107717519700Enterobacter aerogenes EA1509E, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015663:37427383742738376655823821Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_015663:43471874347187437073923553Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_014121:20906302090630212903438405Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-20107BLASTN svgBLASTP svg
NC_013961:851044*85104488459933556Erwinia amylovora, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome5e-26127BLASTN svgBLASTP svg
NC_011146:896000*89600091840322404Geobacter bemidjiensis Bem, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007645:14432961443296146759924304Hahella chejuensis KCTC 2396, complete genome8e-22113BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome2e-25125BLASTN svgBLASTP svg
NC_015379:25052332505233254669441462Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,9e-31143BLASTN svgBLASTP svg
NC_007492:33840773384077341717433098Pseudomonas fluorescens PfO-1, complete genome2e-19105BLASTN svgBLASTP svg
NC_007492:31804803180480323474054261Pseudomonas fluorescens PfO-1, complete genome6e-112412BLASTN svgBLASTP svg
NC_012660:21433762143376220316659791Pseudomonas fluorescens SBW25 chromosome, complete genome4e-48200BLASTN svgBLASTP svg
NC_015410:30934653093465315702663562Pseudomonas mendocina NK-01 chromosome, complete genome4e-39170BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome3e-138500BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_005773:16757931675793169861222820Pseudomonas syringae pv. phaseolicola 1448A, complete genome01072BLASTN svgBLASTP svg
NC_007005:45158534515853454582229970Pseudomonas syringae pv. syringae B728a, complete genome02617BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome01074BLASTN svgBLASTP svg
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome03170BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome02169BLASTN svgBLASTP svg
NC_004578:31934903193490323511841629Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-62246BLASTN svgBLASTP svg
NC_003295:19935419935423823938886Ralstonia solanacearum GMI1000, complete genome2e-75291BLASTN svgBLASTP svg
NC_009831:1539159*1539159156109921941Shewanella sediminis HAW-EB3, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015976:20643872064387209137026984Sphingobium sp. SYK-6, complete genome1e-23119BLASTN svgBLASTP svg
NC_012691:2614603*26146032727599112997Tolumonas auensis DSM 9187, complete genome2e-28135BLASTN svgBLASTP svg
NC_012691:31265003126500315237825879Tolumonas auensis DSM 9187, complete genome3e-52214BLASTN svgBLASTP svg
NC_002488:16389461638946170065561710Xylella fastidiosa 9a5c, complete genome5e-26127BLASTN svgBLASTP svg
NC_015224:17031301703130172897125842Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-25125BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006155:18079021807902182857520674Yersinia pseudotuberculosis IP 32953, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010634:18095001809500182909919600Yersinia pseudotuberculosis PB1/+, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010465:28205002820500286978249283Yersinia pseudotuberculosis YPIII, complete genome7e-1693.7BLASTN svgBLASTP svg