Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3193490 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31934903194245756ISPsy14 transposition helper proteinQuickGO ontologyBLASTP
31944913194874384hypothetical protein
31951893195731543hypothetical proteinBLASTP
31956683196132465hypothetical proteinBLASTP
319625331984392187TonB-dependent siderophore receptor putativeQuickGO ontologyBLASTP
31984503199280831ThiJPfpI family proteinQuickGO ontologyBLASTP
32003893200676288cytochrome c family proteinQuickGO ontologyBLASTP
32009053201393489hypothetical proteinBLASTP
32013933201959567SCO1SenC family proteinQuickGO ontologyBLASTP
32033213203902582hypothetical proteinBLASTP
320464832070022355TonB-dependent receptor putativeQuickGO ontologyBLASTP
32083123208635324DNA-binding proteinQuickGO ontologyBLASTP
320924532105491305site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
321329732146311335site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
32151133215469357hypothetical proteinBLASTP
321571632183162601hypothetical proteinBLASTP
321824032196191380helicase domain proteinQuickGO ontologyBLASTP
321960732199783724Fe-4S binding domain proteinQuickGO ontologyBLASTP
32199753220970996oxidoreductase molybdopterin-binding subunitQuickGO ontologyBLASTP
322097632231862211aldehyde oxidase and xanthine dehydrogenase family proteinQuickGO ontologyBLASTP
32232263224140915transcriptional regulator LysR familyQuickGO ontologyBLASTP
322414632249347894-carboxymuconolactone decarboxylase putativeQuickGO ontologyBLASTP
32249313225332402cupin family proteinQuickGO ontologyBLASTP
32259353226375441TspOMBR family proteinQuickGO ontologyBLASTP
322639332275711179hypothetical proteinBLASTP
32275473227669123hypothetical protein
322774732292761530hypothetical proteinBLASTP
322928832324223135hypothetical proteinBLASTP
323241932351182700type III effector HopL1QuickGO ontologyBLASTP