Pre_GI Gene

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Host: NC_009831 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009831:1539159 Shewanella sediminis HAW-EB3, complete genome

Host Lineage: Shewanella sediminis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella sediminis was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, Canada in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees C. RDX is a member of a family of nitramine compounds which are used in the production of explosives. Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
15391591540073915peptidase M23BQuickGO ontologyBLASTP
15401501541121972RNA polymerase sigma 70 subunit RpoD familyQuickGO ontologyBLASTP
154135415439332580DNA mismatch repair protein MutSQuickGO ontologyBLASTP
154427415453351062Calcium-transporting ATPaseQuickGO ontologyBLASTP
15455491546142594transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
15465121546964453hypothetical proteinBLASTP
15474181547723306hypothetical proteinBLASTP
15477381548124387NIPSNAP family containing proteinQuickGO ontologyBLASTP
15486741549606933cytochrome c family proteinQuickGO ontologyBLASTP
154961815516362019outer membrane proteinQuickGO ontologyBLASTP
155166015541492490anaerobic dimethyl sulfoxide reductase A subunit DmsAYnfE family proteinQuickGO ontologyBLASTP
155416415547996364Fe-4S ferredoxin iron-sulfur binding domain proteinQuickGO ontologyBLASTP
15548501555464615cytoplasmic chaperone TorD family proteinQuickGO ontologyBLASTP
15554641556195732uncharacterized endonuclease III related proteinQuickGO ontologyBLASTP
15562941557100807Transcriptional regulator-like proteinQuickGO ontologyBLASTP
15571101557952843transcriptional regulator LysR familyQuickGO ontologyBLASTP
15583171559180864phosphataseQuickGO ontologyBLASTP
15591671560048882hypothetical proteinBLASTP
15601871560951765hypothetical proteinBLASTP