Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3609890 Shigella flexneri 2a str. 301, complete genome

Start: 3609890, End: 3610807, Length: 918

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002695:4153394:4154046415404641550711026Escherichia coli O157:H7 str. Sakai, complete genomeputative periplasmic binding transport protein2e-180631
CP002185:3627992:3632001363200136330261026Escherichia coli W, complete genome2e-180631
NC_015857:731982:7529317529317539621032Brucella pinnipedialis B2/94 chromosome chromosome 1, completeamino acid ABC transporter periplasmic amino acid-binding protein5e-101367
NC_013119:707804:7294557294557304861032Brucella microti CCM 4915 chromosome 1, complete sequenceamino acid ABC transporter substrate-binding protein6e-101367
NC_009505:727694:7493137493137503441032Brucella ovis ATCC 25840 chromosome I, complete sequenceamino acid ABC transporter periplasmic amino acid-binding protein6e-101367
NC_017248:721764:7433757433757444061032Brucella melitensis NI chromosome chromosome I, complete sequencegeneral L-amino acid-binding periplasmic protein AAPJ precursor5e-100364
NC_008702:1432952:1449038144903814500721035Azoarcus sp. BH72, complete genomeputative amino acid-binding protein7e-98357
NC_011887:72364:9346493464944891026Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeextracellular solute-binding protein family 31e-85316
NC_009654:4624459:4625689462568946267081020Marinomonas sp. MWYL1, complete genomeextracellular solute-binding protein4e-77288
NC_007516:1618033:1646318164631816473791062Synechococcus sp. CC9605, complete genomeextracellular solute-binding protein, family 38e-69260
NC_014761:1321187:1331137133113713321561020Oceanithermus profundus DSM 14977 chromosome, complete genomeamino acid ABC transporter substrate-binding protein, paat family2e-67256
NC_012108:616088:618476618476619135660Desulfobacterium autotrophicum HRM2, complete genomeAapJ26e-67254
NC_013093:2230171:224854822485482249507960Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 31e-48193
NC_008312:7287000:72904027290402730068510284Trichodesmium erythraeum IMS101, complete genomeNa-Ca exchanger/integrin-beta41e-41170
NC_005773:4539751:455414345541434555096954Pseudomonas syringae pv. phaseolicola 1448A, complete genomeamino-acid binding protein, putative5e-35148
NC_012108:616088:619136619136619495360Desulfobacterium autotrophicum HRM2, complete genomeAapJ17e-1994.7
NC_007907:5297477:531783553178355318665831Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-1994.4
NC_015138:4666544:468047446804744681385912Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completefamily 3 extracellular solute-binding protein4e-1892.4
NC_006177:520055:531674531674532501828Symbiobacterium thermophilum IAM 14863, complete genomeamino acid ABC transporter substrate-binding protein4e-1892
NC_007626:4135961:416472041647204165628909Magnetospirillum magneticum AMB-1, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain1e-1687
NC_008752:4665699:467961846796184680529912Acidovorax avenae subsp. citrulli AAC00-1, complete genomeextracellular solute-binding protein, family 32e-1686.7
NC_020409:621792:638065638065638871807Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeABC transporter glutamine-binding protein glnH8e-1684.7
NC_008027:5576458:557558955755895576461873Pseudomonas entomophila L48, complete genomeamino acid ABC transporter, periplasmic amino acid-binding protein1e-1584
NC_010505:5035668:504504550450455045944900Methylobacterium radiotolerans JCM 2831, complete genomeextracellular solute-binding protein family 34e-1479
NC_015275:1034230:105361510536151054481867Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, periplasmic subunit family 35e-1478.6
NC_007347:1215358:122138312213831222276894Ralstonia eutropha JMP134 chromosome 1, complete sequenceextracellular solute-binding protein, family 31e-1377.4
NC_007907:4859735:486376748637674864603837Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1376.3
NC_008314:1825223:184588918458891846827939Ralstonia eutropha H16 chromosome 2, complete sequenceABC-type transporter, periplasmic component: PAAT family4e-1375.9
NC_010161:1598000:161336916133691614274906Bartonella tribocorum CIP 105476, complete genomeamino-acid ABC transporter binding protein6e-1375.1
NC_008783:671349:678545678545679453909Bartonella bacilliformis KC583, complete genomeglutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein1e-1273.6
NC_016629:4081500:410174641017464102567822Desulfovibrio africanus str. Walvis Bay chromosome, completeABC transporter substrate-binding protein2e-1273.2
NC_008783:671349:6770176770176783991383Bartonella bacilliformis KC583, complete genomeputative glutamate/aspartate ABC transporter, permease protein/periplasmic glutamate/aspartate-binding protein3e-1272.8
NC_008529:197272:209319209319210179861Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeABC-type amino acid transport system, periplasmic component/domain3e-1272.8
NC_009715:1202242:120549012054901206356867Campylobacter curvus 525.92 chromosome, complete genomeacriflavine resistance protein4e-1272.4
NC_014727:889132:904535904535905395861Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,amino acid ABC transporter substrate-binding protein4e-1272.4
NC_010511:6756000:676616967661696767065897Methylobacterium sp. 4-46 chromosome, complete genomeextracellular solute-binding protein4e-1272
NC_008054:201075:217468217468218328861Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeAmino acid ABC transporter, substrate binding protein8e-1271.2
NC_015726:406450:429482429482430420939Cupriavidus necator N-1 chromosome 1, complete sequenceglutamate/aspartate ABC transporter permease GltI1e-1170.5
NC_015138:272500:283696283696284613918Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completefamily 3 extracellular solute-binding protein2e-1169.7
NC_014306:4106569:410760341076034108418816Erwinia billingiae Eb661, complete genomepolar amino acid ABC transporter, periplasmic ligand binding protein4e-1168.9
NC_008786:1332041:1353843135384313549641122Verminephrobacter eiseniae EF01-2, complete genomeextracellular solute-binding protein, family 31e-1067.4
NC_005955:947500:972281972281973192912Bartonella quintana str. Toulouse, complete genomeAmino-acid ABC transporter binding protein1e-1067.4
NC_010473:623810:625394625394626302909Escherichia coli str. K-12 substr. DH10B, complete genomeglutamate and aspartate transporter subunit, periplasmic-binding component of ABC superfamily2e-1067
NC_018528:697553:718331718331719191861Lactobacillus helveticus R0052 chromosome, complete genomeABC superfamily ATP binding cassette transporter, binding protein2e-1066.2
NC_021175:1291707:131353213135321314398867Streptococcus oligofermentans AS 1.3089, complete genomeputative periplasmic solute-binding transport protein3e-1065.9
NC_003296:1419992:144028214402821441178897Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE SUBSTRATE-BINDING PERIPLASMIC (PBP) ABC TRANSPORTER PROTEIN4e-1065.5
NC_014323:3976351:402767740276774028594918Herbaspirillum seropedicae SmR1 chromosome, complete genomeamino acid ABC transporter/signal transduction system periplasmic protein1e-0964.3
NC_016612:3087615:309957030995703100481912Klebsiella oxytoca KCTC 1686 chromosome, complete genomeglutamate and aspartate transporter subunit1e-0964.3
NC_014310:1413210:143883314388331439723891Ralstonia solanacearum PSI07 megaplasmid, complete sequencesubstrate-binding periplasmic (pbp) ABC transporter protein1e-0963.9
NC_007413:4278252:427862142786214279436816Anabaena variabilis ATCC 29413, complete genomeextracellular solute-binding protein, family 32e-0963.5
NC_010612:835648:860694860694861680987Mycobacterium marinum M, complete genomeglutamine-binding lipoprotein GlnH3e-0962.8
NC_012846:1467446:149041414904141491319906Bartonella grahamii as4aup, complete genomeglutamate-aspartate ABC transporter periplasmic component GltI4e-0962.4
NC_007908:1010162:101645310164531017295843Rhodoferax ferrireducens T118, complete genomeextracellular solute-binding protein, family 34e-0962.4
NC_020409:621792:629349629349630176828Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeExtracellular solute-binding protein family 37e-0961.6
NC_017075:4880807:488417548841754885077903Rubrivivax gelatinosus IL144, complete genomefamily 3 extracellular solute-binding protein8e-0961.2
NC_017218:1166844:118298111829811183829849Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeABC transporter substrate-binding protein1e-0861.2
NC_012881:3004784:303306830330683033856789Desulfovibrio salexigens DSM 2638, complete genomeextracellular solute-binding protein family 31e-0860.5
NC_015376:2010009:203450220345022035323822Burkholderia gladioli BSR3 chromosome chromosome 2, completeextracellular solute-binding protein2e-0860.1
NC_015138:3022414:304446530444653045361897Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completefamily 3 extracellular solute-binding protein4e-0858.9
NC_010572:188500:194789194789195655867Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative glutamate transporter glutamate-binding protein6e-0858.5
NC_015856:439795:448627448627449535909Collimonas fungivorans Ter331 chromosome, complete genomeglutamate aspartate periplasmic binding protein8e-0858.2
NC_015389:2030154:205005520500552050903849Coriobacterium glomerans PW2 chromosome, complete genomeamino acid ABC transporter substrate-binding protein, PAAT family1e-0757.8
NC_007948:4558000:459039545903954591306912Polaromonas sp. JS666, complete genomeextracellular solute-binding protein, family 39e-0857.8
NC_017223:51180:565055650557404900Bordetella pertussis CS chromosome, complete genomeamino acid ABC transporter binding protein1e-0757.4
NC_002929:52500:565055650557404900Bordetella pertussis Tohama I, complete genomeamino-acid ABC transporter binding protein precursor1e-0757.4
NC_015602:1143038:115796011579601158775816Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeglutamine ABC transporter binding protein1e-0757
NC_008786:3845988:384832538483253849149825Verminephrobacter eiseniae EF01-2, complete genomeextracellular solute-binding protein, family 34e-0755.8
NC_015428:823420:8399038399038420502148Lactobacillus buchneri NRRL B-30929 chromosome, complete genomepolar amino acid ABC transporter inner membrane subunit5e-0755.5
NC_002945:476835:498333498333499319987Mycobacterium bovis AF2122/97, complete genomeglutamine-binding lipoprotein6e-0755.1
NC_009525:477093:498624498624499610987Mycobacterium tuberculosis H37Ra, complete genomeamino acid ABC transporter substrate-binding protein6e-0755.1
NC_000962:475816:497314497314498300987Mycobacterium tuberculosis H37Rv, complete genomePROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP)6e-0755.1
NC_012207:477500:498462498462499448987Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative glutamine-binding lipoprotein6e-0755.1
NC_011894:957897:969653969653970456804Methylobacterium nodulans ORS 2060, complete genomeextracellular solute-binding protein family 36e-0755.1
NC_009565:479500:500484500484501470987Mycobacterium tuberculosis F11, complete genomeglutamine-binding lipoprotein glnH6e-0755.1
NC_019950:481881:503702503702504688987Mycobacterium canettii CIPT 140060008 complete genomePutative glutamine-binding lipoprotein GlnH (GLNBP)6e-0755.1
NC_008769:507000:528129528129529115987Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative glutamine-binding lipoprotein glnH6e-0755.1
NC_015848:483500:507683507683508669987Mycobacterium canettii CIPT 140010059, complete genomeputative glutamine-binding lipoprotein GLNH (GLNBP)6e-0755.1
NC_012943:476500:497573497573498559987Mycobacterium tuberculosis KZN 1435 chromosome, complete genomeglutamine-binding lipoprotein glnH6e-0755.1
NC_016768:476500:497573497573498559987Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeglutamine-binding lipoprotein glnH6e-0755.1
NC_016804:477500:498463498463499449987Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative glutamine-binding lipoprotein6e-0755.1
NC_017186:361444:362994362994363938945Amycolatopsis mediterranei S699 chromosome, complete genomeABC transporter substrate-binding protein8e-0754.7
NC_014910:1050706:106191710619171062750834Alicycliphilus denitrificans BC chromosome, complete genomeextracellular solute-binding protein family 31e-0653.9
NC_007929:1463295:150419615041961505026831Lactobacillus salivarius subsp. salivarius UCC118, complete genomeGlutamine-binding protein1e-0653.9