Pre_GI: BLASTP Hits

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Query: NC_003305:1297785:1306235 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1306235, End: 1306313, Length: 79

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:58688586885876679Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala4e-0753.5
NC_003305:1035342:10437521043752104383079Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala4e-0753.5
NC_007761:3564449:357587835758783576052175Rhizobium etli CFN 42, complete genometRNA-Ala1e-0651.6
NC_007761:3962474:397283939728393973013175Rhizobium etli CFN 42, complete genometRNA-Ala1e-0651.6
NC_007761:57199:643746437464548175Rhizobium etli CFN 42, complete genometRNA-Ala1e-0651.6
NC_010994:57362:64713647136478876Rhizobium etli CIAT 652, complete genometRNA-Ala2e-0650.8
NC_015183:51500:59207592075928276Agrobacterium sp. H13-3 chromosome, complete genometRNA-Ala2e-0650.8
NC_011988:1036618:10466281046628104670376Agrobacterium vitis S4 chromosome 2, complete genometRNA-Ala2e-0650.8
NC_003063:757999:76844676844676852176Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala2e-0650.8
NC_003047:2798367:28094562809456280953176Sinorhizobium meliloti 1021, complete genometRNA-Ala2e-0650.8
NC_010994:3666651:36773213677321367739676Rhizobium etli CIAT 652, complete genometRNA-Ala2e-0650.8
NC_012850:3867743:38792103879210387928576Rhizobium leguminosarum bv. trifolii WSM1325, complete genometRNA-Ala2e-0650.8
NC_003047:3202125:32123103212310321238576Sinorhizobium meliloti 1021, complete genometRNA-Ala2e-0650.8
NC_012850:3454270:34643453464345346442076Rhizobium leguminosarum bv. trifolii WSM1325, complete genometRNA-Ala2e-0650.8
NC_015183:2483653:24965102496510249658576Agrobacterium sp. H13-3 chromosome, complete genometRNA-Ala2e-0650.8
NC_008380:4532969:45443564544356454443176Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala2e-0650.8
NC_012850:4422966:44310114431011443108676Rhizobium leguminosarum bv. trifolii WSM1325, complete genometRNA-Ala2e-0650.8
NC_003062:2506959:25164042516404251647976Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala2e-0650.8
NC_010994:4071131:40812904081290408136576Rhizobium etli CIAT 652, complete genometRNA-Ala2e-0650.8
NC_008380:58232:65632656326570776Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala2e-0650.8
NC_011988:924721:93303993303993311476Agrobacterium vitis S4 chromosome 2, complete genometRNA-Ala2e-0650.8
NC_003063:1019674:10309291030929103100476Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala2e-0650.8
NC_012587:3613162:36228793622879362295476Rhizobium sp. NGR234, complete genometRNA-Ala2e-0650.8
NC_003062:50756:58487584875856276Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala2e-0650.8
NC_003047:74986:83723837238379876Sinorhizobium meliloti 1021, complete genometRNA-Ala2e-0650.8
NC_012587:2744731:27560082756008275608376Rhizobium sp. NGR234, complete genometRNA-Ala2e-0650.8
NC_008380:4078670:40892764089276408935176Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala2e-0650.8