Pre_GI Gene

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Host: NC_011988 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011988:924721 Agrobacterium vitis S4 chromosome 2, complete genome

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9247219257551035dipeptidaseQuickGO ontologyBLASTP
9260479278791833thiamine biosynthesis protein ThiCQuickGO ontologyBLASTP
927881928873993glycine oxidase ThiOQuickGO ontologyBLASTP
928870929067198thiamine biosynthesis protein ThiSQuickGO ontology
929069929842774thiamin biosynthesis ThiGQuickGO ontologyBLASTP
929839930450612thiamine-phosphate pyrophosphorylase proteinQuickGO ontologyBLASTP
93303993311476tRNA-AlaQuickGO ontologyBLASTP
9375239390311509pyruvate kinaseQuickGO ontologyBLASTP
9391389414742337exopolysaccharide polymerizationtransport proteinQuickGO ontologyBLASTP
942115943110996succinoglycan biosynthesis glycosyltransferaseQuickGO ontologyBLASTP
943107944039933succinoglycan biosynthesis proteinQuickGO ontologyBLASTP
9440369450611026succinoglycan biosynthesis proteinQuickGO ontologyBLASTP
9450519462951245succinoglycan biosynthesis proteinQuickGO ontologyBLASTP
946525947331807endo-13-14-beta-glycanaseQuickGO ontologyBLASTP