Pre_GI Gene

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Host: NC_003062 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003062:2506959 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
250695925083951437hypothetical proteinBLASTP
25083922509066675hypothetical proteinBLASTP
25092162509995780hypothetical proteinBLASTP
250999425120302037hypothetical proteinBLASTP
2516404251647976tRNA-AlaQuickGO ontologyBLASTP
25190082519958951phosphoribosylaminoimidazole-succinocarboxamide synthaseQuickGO ontologyBLASTP
25199622520621660hypothetical proteinBLASTP
252079125220231233hypothetical proteinBLASTP
252207725251663090hypothetical proteinBLASTP
252522925267701542hypothetical proteinBLASTP
25268912527460570elongation factor PQuickGO ontologyBLASTP
252771225287761065hypothetical proteinBLASTP
252874625298371092hypothetical proteinBLASTP