Pre_GI Gene

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Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:1035342 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10353421036142801hypothetical proteinBLASTP
103621610377601545histidine ammonia-lyaseQuickGO ontologyBLASTP
103775710390161260imidazolonepropionaseQuickGO ontologyBLASTP
103913010404761347atrazine chlorohydrolaseQuickGO ontologyBLASTP
10404991041245747transcriptional regulator GntR familyQuickGO ontologyBLASTP
104180310432941492SSU 16S ribosomal RNAQuickGO ontologyBLASTP
1043617104369680tRNA-IleQuickGO ontologyBLASTP
1043752104383079tRNA-AlaQuickGO ontologyBLASTP
10443021044691390hypothetical proteinBLASTP
104478310470392257SSU 23S ribosomal RNAQuickGO ontologyBLASTP
10473651047556192hypothetical proteinBLASTP
10476701047792123SSU 5S ribosomal RNAQuickGO ontologyBLASTP
1048028104810780tRNA-MetQuickGO ontology
10481541048261108hypothetical proteinBLASTP
10482651048672408hypothetical proteinBLASTP
104898010502901311oxidoreductaseQuickGO ontologyBLASTP
105059010517351146hypothetical proteinBLASTP
10517461052690945ornithine cyclodeaminaseQuickGO ontologyBLASTP
105270810541651458aldehyde dehydrogenaseQuickGO ontologyBLASTP
10541681055082915transcriptional regulator LysR familyQuickGO ontologyBLASTP
105526810565961329oxidoreductaseQuickGO ontologyBLASTP
10567311057729999hypothetical proteinBLASTP
10577571058608852ABC transporter membrane spanning proteinQuickGO ontologyBLASTP
10586051059453849ABC transporter membrane spanning proteinQuickGO ontologyBLASTP
105946710605521086ABC transporter nucleotide bindingATPase proteinQuickGO ontologyBLASTP