Pre_GI: BLASTN Hits

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Query: NC_020134:2801199 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2801199, End: 2822654, Length: 21456

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009012:3421000*3421000343886317864Clostridium thermocellum ATCC 27405, complete genome6e-32147BLASTN svgBLASTP svg
NC_012034:1783912*1783912182367039759Anaerocellum thermophilum DSM 6725, complete genome5e-23117BLASTN svgBLASTP svg
NC_015949:1180755*1180755121693036176Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_014721:1777644*1777644181600538362Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete2e-22115BLASTN svgBLASTP svg
NC_014652:1032711*1032711107395141241Caldicellulosiruptor hydrothermalis 108 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_014720:1140765*1140765116059919835Caldicellulosiruptor kronotskyensis 2002 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_021182:4557608*4557608459730239695Clostridium pasteurianum BC1, complete genome5e-20107BLASTN svgBLASTP svg
NC_014614:2295131*2295131232283227702Clostridium sticklandii, complete genome2e-19105BLASTN svgBLASTP svg
NC_010516:3759136*3759136379956240427Clostridium botulinum B1 str. Okra, complete genome2e-19105BLASTN svgBLASTP svg
NC_007503:2063451*2063451208564322193Carboxydothermus hydrogenoformans Z-2901, complete genome7e-19103BLASTN svgBLASTP svg
NC_011898:874457*87445790039625940Clostridium cellulolyticum H10, complete genome7e-19103BLASTN svgBLASTP svg
NC_014657:1540500*1540500155862118122Caldicellulosiruptor owensensis OL chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014377:112992*11299214783634845Thermosediminibacter oceani DSM 16646 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013316:81969*8196911125629288Clostridium difficile R20291, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_009089:87581*8758110818120601Clostridium difficile 630, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_014392:969498*969498100915039653Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010723:223935*22393527475150817Clostridium botulinum E3 str. Alaska E43, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010674:222016*22201625822836213Clostridium botulinum B str. Eklund 17B, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003030:3251941*3251941329013838198Clostridium acetobutylicum ATCC 824, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012563:3956500*3956500399649139992Clostridium botulinum A2 str. Kyoto, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015687:3252233*3252233329176539533Clostridium acetobutylicum DSM 1731 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010520:3788702*3788702382916340462Clostridium botulinum A3 str. Loch Maree, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014393:4482896*4482896452909946204Clostridium cellulovorans 743B chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014328:4387303*4387303445852771225Clostridium ljungdahlii ATCC 49587 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009922:542500*54250057462332124Alkaliphilus oremlandii OhILAs, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004557:2711702*2711702274444632745Clostridium tetani E88, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010001:4486170*4486170451730531136Clostridium phytofermentans ISDg, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013921:1977444*1977444203224454801Thermoanaerobacter italicus Ab9 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014152:305955*30595532559919645Thermincola sp. JR, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014209:1910109*1910109194573835630Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_015737:1931541*1931541195374722207Clostridium sp. SY8519, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015913:1491393*1491393153098039588Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015958:2251619*2251619232072969111Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_019970:336472*33647241533078859Thermoanaerobacterium thermosaccharolyticum M0795, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015519:197836*19783623759939764Tepidanaerobacter sp. Re1 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014410:403776*40377646022156446Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,4e-1177.8BLASTN svgBLASTP svg
NC_003869:2143892*2143892219937255481Thermoanaerobacter tengcongensis MB4, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009437:2367842*2367842241150043659Caldicellulosiruptor saccharolyticus DSM 8903, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015318:1336282*1336282137604139760Hippea maritima DSM 10411 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_016012:1380260*1380260140143821179Candidatus Arthromitus sp. SFB-rat-Yit, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015555:327562*32756238328255721Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_014964:388458*38845844542856971Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_014538:1998180*1998180202679728618Thermoanaerobacter sp. X513 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011899:124500*12450014268218183Halothermothrix orenii H 168, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014758:1546898*1546898157379926902Calditerrivibrio nitroreducens DSM 19672 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_014759:3572500*3572500360200929510Marivirga tractuosa DSM 4126 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_019978:178277*17827721455436278Halobacteroides halobius DSM 5150, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_018515:223164*22316424765124488Desulfosporosinus meridiei DSM 13257 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014376:4048728*4048728406728818561Clostridium saccharolyticum WM1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013525:766848*76684878973422887Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003366:2731995*2731995276168829694Clostridium perfringens str. 13, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008261:2957354*2957354298433226979Clostridium perfringens ATCC 13124, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008262:2598920*2598920264903950120Clostridium perfringens SM101, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013406:6422000*6422000644307321074Paenibacillus sp. Y412MC10 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014925:1970500*1970500198985319354Staphylococcus pseudintermedius HKU10-03 chromosome, complete6e-0763.9BLASTN svgBLASTP svg
NC_002745:2289829*2289829230761617788Staphylococcus aureus subsp. aureus N315, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002758:2359329*2359329237711617788Staphylococcus aureus subsp. aureus Mu50, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002951:2288674*2288674230711718444Staphylococcus aureus subsp. aureus COL, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002952:2390668*2390668241976729100Staphylococcus aureus subsp. aureus MRSA252, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002953:2282236*2282236231132529090Staphylococcus aureus subsp. aureus MSSA476, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003923:2301234*2301234231971018477Staphylococcus aureus subsp. aureus MW2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007622:2239799*2239799227094331145Staphylococcus aureus RF122, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007716:517356*51735654065723302Aster yellows witches'-broom phytoplasma AYWB, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013316:120759*12075915711036352Clostridium difficile R20291, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010079:2352691*2352691237059917909Staphylococcus aureus subsp. aureus USA300_TCH1516, complete3e-0661.9BLASTN svgBLASTP svg
NC_009782:2362000*2362000237977917780Staphylococcus aureus subsp. aureus Mu3, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007795:2299327*2299327231711417788Staphylococcus aureus subsp. aureus NCTC 8325, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007793:2352953*2352953237101718065Staphylococcus aureus subsp. aureus USA300, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014220:2239594*2239594226249822905Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_008510:3147839*3147839316559917761Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,1e-0560BLASTN svgBLASTP svg
NC_008508:508000*50800053017222173Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,1e-0560BLASTN svgBLASTP svg
NC_008508:481000*48100049909918100Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,1e-0560BLASTN svgBLASTP svg
NC_002967:800109*80010982264722539Treponema denticola ATCC 35405, complete genome1e-0560BLASTN svgBLASTP svg