Pre_GI: BLASTN Hits

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Query: NC_009378:106193 Yersinia pestis Pestoides F plasmid MT, complete sequence

Start: 106193, End: 136973, Length: 30781

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004838:510135101310003049018Yersinia pestis KIM plasmid pMT-1, complete sequence036290BLASTN svgBLASTP svg
NC_008118:567775677710299946223Yersinia pestis Nepal516 plasmid pMT, complete sequence036280BLASTN svgBLASTP svg
NC_010158:928199281911499922181Yersinia pestis Angola plasmid pMT-pPCP, complete sequence036160BLASTN svgBLASTP svg
NC_003134:64672646728918124510Yersinia pestis CO92 plasmid pMT1, complete sequence029490BLASTN svgBLASTP svg
NC_008120:62000620008949927500Yersinia pestis Antiqua plasmid pMT, complete sequence026470BLASTN svgBLASTP svg
NC_005815:611486114811099949852Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete023820BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,01697BLASTN svgBLASTP svg
NC_011750:10940001094000111509921100Escherichia coli IAI39 chromosome, complete genome01604BLASTN svgBLASTP svg
CU928145:3360967*3360967340151440548Escherichia coli 55989 chromosome, complete genome01602BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome01602BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome01602BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence01602BLASTN svgBLASTP svg
NC_011748:3360967*3360967340151440548Escherichia coli 55989, complete genome01602BLASTN svgBLASTP svg
NC_011750:3545466*3545466356309917634Escherichia coli IAI39 chromosome, complete genome01602BLASTN svgBLASTP svg
NC_011750:91995391995393907219120Escherichia coli IAI39 chromosome, complete genome01602BLASTN svgBLASTP svg
NC_011750:15650001565000158659921600Escherichia coli IAI39 chromosome, complete genome01138BLASTN svgBLASTP svg
NC_009787:17344173444299925656Escherichia coli E24377A plasmid pETEC_35, complete sequence0712BLASTN svgBLASTP svg
NC_002128:35000350006549030491Escherichia coli O157:H7 str. Sakai plasmid pO157, complete0710BLASTN svgBLASTP svg
NC_007414:56508565089199935492Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequence0702BLASTN svgBLASTP svg
NC_010693:112329523295Erwinia tasmaniensis plasmid pET46, complete sequence1e-178634BLASTN svgBLASTP svg
NC_006856:958309583012194026111Salmonella enterica subsp. enterica serovar Choleraesuis str2e-174620BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence7e-165589BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome4e-157563BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence3e-59238BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome5e-39170BLASTN svgBLASTP svg
NC_010660:175200*17520020478429585Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence5e-33151BLASTN svgBLASTP svg
NC_007608:970929709212311926028Shigella boydii Sb227 plasmid pSB4_227, complete sequence5e-33151BLASTN svgBLASTP svg
NC_004851:19170919170922249930791Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence5e-33151BLASTN svgBLASTP svg
NC_014228:4360676*4360676438499224317Xenorhabdus nematophila ATCC 19061, complete genome8e-32147BLASTN svgBLASTP svg
NC_009650:65732657328884123110Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN4,2e-26129BLASTN svgBLASTP svg
NC_007385:15751615751617664619131Shigella sonnei Ss046 plasmid pSS_046, complete sequence7e-23117BLASTN svgBLASTP svg
NC_011749:34056*340565613322078Escherichia coli UMN026 plasmid p1ESCUM, complete sequence1e-21113BLASTN svgBLASTP svg
NC_014305:97055*9705511967922625Erwinia billingiae Eb661 plasmid pEB170, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_011206:20195772019577203811818542Acidithiobacillus ferrooxidans ATCC 53993, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_015063:111964019640Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence6e-1177.8BLASTN svgBLASTP svg
NC_003277:22257222574180619550Salmonella typhimurium LT2 plasmid pSLT, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_015757:2890479*2890479291259922121Sulfobacillus acidophilus TPY chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015458:2998000*2998000302249324494Pusillimonas sp. T7-7 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014973:4630132*4630132468542755296Geobacter sp. M18 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_021066:3703725*3703725372609922375Raoultella ornithinolytica B6, complete genome4e-0661.9BLASTN svgBLASTP svg