Pre_GI: BLASTN Hits

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Query: NC_008268:5781604 Rhodococcus sp. RHA1, complete genome

Start: 5781604, End: 5814244, Length: 32641

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012522:59876445987644601286925226Rhodococcus opacus B4, complete genome9e-109402BLASTN svgBLASTP svg
NC_018581:11809511180951122156540615Gordonia sp. KTR9 chromosome, complete genome3e-102381BLASTN svgBLASTP svg
NC_019950:16899101689910171687926970Mycobacterium canettii CIPT 140060008 complete genome2e-81311BLASTN svgBLASTP svg
NC_015848:17081761708176173271724542Mycobacterium canettii CIPT 140010059, complete genome2e-81311BLASTN svgBLASTP svg
NC_009565:16886421688642171216323522Mycobacterium tuberculosis F11, complete genome6e-79303BLASTN svgBLASTP svg
NC_009525:16855221685522171115225631Mycobacterium tuberculosis H37Ra, complete genome6e-79303BLASTN svgBLASTP svg
NC_002755:16841611684161170880524645Mycobacterium tuberculosis CDC1551, complete genome6e-79303BLASTN svgBLASTP svg
NC_000962:16840051684005170853924535Mycobacterium tuberculosis H37Rv, complete genome6e-79303BLASTN svgBLASTP svg
NC_014659:4299552*4299552434331043759Rhodococcus equi 103S, complete genome7e-51210BLASTN svgBLASTP svg
NC_015125:24439452443945246359819654Microbacterium testaceum StLB037, complete genome4e-43184BLASTN svgBLASTP svg
NC_002944:12854361285436132132435889Mycobacterium avium subsp. paratuberculosis K-10, complete genome2e-32149BLASTN svgBLASTP svg
NC_013173:36793263679326373266253337Desulfomicrobium baculatum DSM 4028, complete genome5e-21111BLASTN svgBLASTP svg
NC_018531:36258103625810365959233783Arthrobacter sp. Rue61a chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_012490:2006716*2006716203398627271Rhodococcus erythropolis PR4, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_015711:6796082*6796082684217246091Myxococcus fulvus HW-1 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_014100:533322*53332256190028579Caulobacter segnis ATCC 21756 chromosome, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_004463:17725411772541179709924559Bradyrhizobium japonicum USDA 110, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_007760:49111814911181493806026880Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_008596:60095116009511605382644316Mycobacterium smegmatis str. MC2 155, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_011145:49609404960940498025219313Anaeromyxobacter sp. K, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_013173:2884887*2884887293159946713Desulfomicrobium baculatum DSM 4028, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_012522:5952307*5952307597971027404Rhodococcus opacus B4, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_013595:71957647195764721894723184Streptosporangium roseum DSM 43021, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008268:2313583*2313583234448830906Rhodococcus sp. RHA1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007489:42500425006678724288Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_007777:28410002841000290393262933Frankia sp. CcI3, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_011883:48718748718751019523009Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,1e-0973.8BLASTN svgBLASTP svg
NC_020126:4974877*4974877500016825292Myxococcus stipitatus DSM 14675, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_000962:1095078*1095078111574920672Mycobacterium tuberculosis H37Rv, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_002755:1095105*1095105111578720683Mycobacterium tuberculosis CDC1551, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_002945:1095337*1095337111759922263Mycobacterium bovis AF2122/97, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_003155:3913789*3913789393748923701Streptomyces avermitilis MA-4680, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_003902:71447871447874861534138Xanthomonas campestris pv. campestris str. ATCC 33913, complete4e-0971.9BLASTN svgBLASTP svg
NC_007086:42934054293405431133917935Xanthomonas campestris pv. campestris str. 8004, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008769:1125567*1125567114763722071Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_009525:1096386*1096386111845622071Mycobacterium tuberculosis H37Ra, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_018750:79136007913600793264719048Streptomyces venezuelae ATCC 10712, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_015848:1105892*1105892112732621435Mycobacterium canettii CIPT 140010059, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013194:963735963735100191838184Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete4e-0971.9BLASTN svgBLASTP svg
NC_012207:1097228*1097228111789920672Mycobacterium bovis BCG str. Tokyo 172, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_009565:1098847*1098847112029321447Mycobacterium tuberculosis F11, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-0869.9BLASTN svgBLASTP svg
NC_002977:11984381198438121974121304Methylococcus capsulatus str. Bath, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_007005:2191500*2191500223078139282Pseudomonas syringae pv. syringae B728a, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_007908:1328832*1328832136532136490Rhodoferax ferrireducens T118, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008781:3365468*3365468340127235805Polaromonas naphthalenivorans CJ2, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_012522:2031786*2031786206157229787Rhodococcus opacus B4, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015966:22569432256943228043123489Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_002947:48050604805060483118826129Pseudomonas putida KT2440, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008146:1016446*1016446104459328148Mycobacterium sp. MCS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014933:32510003251000327098419985Bacteroides helcogenes P 36-108 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015138:10160001016000103760521606Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_015711:6522808*6522808656473541928Myxococcus fulvus HW-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008609:3732192*3732192377050638315Pelobacter propionicus DSM 2379, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010551:84695384695386809921147Burkholderia ambifaria MC40-6 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_013222:3060482*3060482308509924618Robiginitalea biformata HTCC2501, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020126:4517133*4517133455758540453Myxococcus stipitatus DSM 14675, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020453:10729791072979112047147493Agromonas oligotrophica S58 DNA, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020453:10842381084238114489760660Agromonas oligotrophica S58 DNA, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014973:26936722693672271365719986Geobacter sp. M18 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011979:2352961*2352961238357030610Geobacter sp. FRC-32, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008095:4858117*4858117490039542279Myxococcus xanthus DK 1622, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_006361:25341922534192255470320512Nocardia farcinica IFM 10152, complete genome4e-0661.9BLASTN svgBLASTP svg