Pre_GI: BLASTP Hits

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Query: NC_016830:2168523:2186179 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 2186179, End: 2186661, Length: 483

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family1e-40165
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family1e-40165
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)1e-1892
NC_007947:1429165:144176714417671442282516Methylobacillus flagellatus KT, complete genomesigma-24 (FecI-like)3e-1787.8
NC_014640:2693060:269731826973182697830513Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI4e-1787
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1787
NC_014305:97055:100558100558101007450Erwinia billingiae Eb661 plasmid pEB170, complete sequenceECF subfamily RNA polymerase sigma-70 factor1e-1685.5
NC_010322:768849:785005785005785511507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-1684
NC_016830:3697173:371576837157683716166399Pseudomonas fluorescens F113 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor4e-1684
NC_017075:1970168:197477419747741975262489Rubrivivax gelatinosus IL144, complete genomeECF subfamily RNA polymerase sigma-70 factor5e-1683.6
NC_005966:1780468:178413917841391784624486Acinetobacter sp. ADP1, complete genomealternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR6e-1683.2
NC_008027:2648560:265202626520262652541516Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily9e-1682.8
NC_018691:1293449:131432713143271314809483Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma factor FecI1e-1582
NC_009937:5033152:503490050349005035424525Azorhizobium caulinodans ORS 571, complete genomeFecI-like protein2e-1581.6
NC_016612:3843358:387250338725033873024522Klebsiella oxytoca KCTC 1686 chromosome, complete genomeRNA polymerase sigma factor FecI3e-1581.3
NC_015594:1210736:121573312157331216245513Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeECF subfamily RNA polymerase sigma-24 subunit7e-1579.7
NC_010510:339879:346474346474347019546Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1479
NC_014228:3591758:359930735993073599843537Xenorhabdus nematophila ATCC 19061, complete genomeProbable RNA polymerase sigma factor fecI2e-1477.8
AC_000091:4501430:452239445223944522915522Escherichia coli W3110 DNA, complete genomeRNA polymerase, sigma 19 factor4e-1477.4
NC_010473:4596500:461754546175454618066522Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; RNA polymerase, sigma 19 factor4e-1477.4
NC_012759:4433500:445447244544724454993522Escherichia coli BW2952 chromosome, complete genomeRNA polymerase sigma factor FecI4e-1477.4
NC_016822:4889656:489396448939644894485522Shigella sonnei 53G, complete genomeRNA polymerase sigma factor FecI4e-1477.4
NC_020409:584000:592654592654593223570Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative sigma-70 factor, ECF subfamily4e-1477
NC_010322:768849:792731792731793237507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-1477
NC_015556:2265940:230300923030092303524516Pseudomonas fulva 12-X chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1476.6
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase1e-1375.5
NC_014640:2693060:269306026930602693566507Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI1e-1375.5
NC_017192:1933106:193904219390421939518477Arcobacter sp. L, complete genomeRNA polymerase sigma factor2e-1375.1
NC_012962:4591295:459787345978734598394522Photorhabdus asymbiotica, complete genomeprobable rna polymerase sigma factor feci2e-1374.7
NC_018691:3525430:353820935382093538730522Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-1373.9
NC_002516:1474000:147472714747271475467741Pseudomonas aeruginosa PAO1, complete genomeprobable sigma-70 factor, ECF subfamily5e-1373.6
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-1373.6
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor5e-1373.6
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily5e-1373.6
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative6e-1373.2
NC_008686:1592073:161056416105641611091528Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily8e-1372.8
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor9e-1372.8
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor9e-1372.8
NC_017187:937649:950332950332950808477Arcobacter butzleri ED-1, complete genomeRNA polymerase sigma factor1e-1272.4
NC_009850:972692:985376985376985852477Arcobacter butzleri RM4018, complete genomesigma factor, ECF family2e-1271.6
NC_004547:1174650:120912612091261209647522Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeRNA polymerase sigma-70 factor2e-1271.6
NC_015572:427732:454649454649455155507Methylomonas methanica MC09 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1271.6
NC_011144:2710876:272475927247592725310552Phenylobacterium zucineum HLK1, complete genomeRNA polymerase sigma-70 factor, ECF subfamily3e-1271.2
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family3e-1270.9
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family3e-1270.9
NC_008687:133728:154267154267154779513Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily4e-1270.5
NC_005126:5188976:519303851930385193559522Photorhabdus luminescens subsp. laumondii TTO1, complete genomeRNA polymerase sigma-70 factor4e-1270.5
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-1270.1
NC_014664:1360524:137481013748101375316507Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-1269.3
NC_014640:5047201:506631150663115066877567Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma-24 subunit1e-1168.6
NC_014540:2908912:291046129104612911012552Burkholderia sp. CCGE1003 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily2e-1168.2
NC_007005:2191500:221606422160642216600537Pseudomonas syringae pv. syringae B728a, complete genomeRNA polymerase sigma-70 factor2e-1168.2
NC_015844:3524175:354680835468083547320513Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor2e-1168.2
NC_010943:1379707:138347313834731384135663Stenotrophomonas maltophilia K279a, complete genomeputative RNA polymerase sigma factor3e-1167.8
NC_008027:4889662:489179248917924892286495Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-1167.4
NC_013421:1954915:197163419716341972143510Pectobacterium wasabiae WPP163, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1167.4
NC_014640:5047201:506220250622025062732531Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI5e-1167
NC_018691:359695:360597360597361097501Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-1065.5
NC_015277:5211779:522919252291925229782591Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1065.1
NC_007492:3655545:367508236750823675633552Pseudomonas fluorescens PfO-1, complete genomeSigma-24 (FecI)3e-1064.3
NC_004663:5194400:520235452023545202908555Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor3e-1064.3
NC_015177:2642368:266242426624242662972549Pedobacter saltans DSM 12145 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1063.9
NC_010338:2136193:214052621405262141062537Caulobacter sp. K31, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1062.8
NC_019960:260997:265241265241265822582Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 13e-0960.8
NC_021184:3174500:320020332002033200760558Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0960.8
NC_004663:3801071:380107138010713801646576Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor4e-0960.5
NC_009040:43791:618926189262389498Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0960.5
NC_011958:1121387:114501711450171145514498Rhodobacter sphaeroides KD131 chromosome 2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0960.1
NC_015164:1812439:182623318262331826790558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0959.7
NC_015160:2239933:226227222622722262844573Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0959.7
NC_014934:869715:876370876370876804435Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily7e-0959.7
NC_006347:625328:638035638035638796762Bacteroides fragilis YCH46, complete genomeRNA polymerase ECF-type sigma factor1e-0858.9
NC_016776:625628:641499641499642059561Bacteroides fragilis 638R, complete genomeputative ECF-type RNA polymerase sigma factor2e-0858.5
NC_016609:4152977:416982841698284170394567Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0858.2
NC_010676:61098:808068080681477672Burkholderia phytofirmans PsJN chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily3e-0857.8
NC_015497:4683741:470916247091624709653492Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0857.4
NC_008542:2631138:264774226477422648323582Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily7e-0856.6
NC_013132:3959258:396273439627343963333600Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0856.6
NC_015593:2841856:288400728840072884540534Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeECF subfamily RNA polymerase sigma-24 subunit7e-0856.2
NC_013061:2077603:209216020921602092726567Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor8e-0856.2
NC_007953:1088933:108893310889331089469537Burkholderia xenovorans LB400 chromosome 3, complete sequenceSigma-24 (FecI)9e-0855.8
NC_004663:4373902:437668943766894377198510Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-0755.1
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0755.1
NC_015160:4285542:430098843009884301557570Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.1
NC_013061:3390399:339834033983403398918579Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor2e-0754.7
NC_014933:2240000:224013422401342240682549Bacteroides helcogenes P 36-108 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0754.3
NC_015164:2683162:268699926869992687556558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0753.9
NC_008060:1945597:196220119622011962782582Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily4e-0753.9
NC_015966:1145974:116775911677591168322564Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-0753.9
NC_010337:2848360:286534728653472865868522Heliobacterium modesticaldum Ice1, complete genomeRNA polymerase sigma-70, region 47e-0753.1
NC_009615:2709040:272511227251122725837726Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-0753.1
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.8
NC_015976:2150676:215816421581642158709546Sphingobium sp. SYK-6, complete genomeRNA polymerase ECF-type sigma factor1e-0652.8
NC_015277:2283530:229844122984412299025585Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_009142:267550:269255269255269797543Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase sigma-70 factor, ECF family1e-0652.4
NC_014931:1044313:106127810612781061889612Variovorax paradoxus EPS chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652
NC_010804:1334581:134683813468381347392555Burkholderia multivorans ATCC 17616 chromosome 1, completeECF subfamily sigma-24 subunit2e-0651.2
NC_016616:2219486:222386922238692224462594Dechlorosoma suillum PS chromosome, complete genomesigma-70 family RNA polymerase sigma factor3e-0651.2
NC_014100:2782000:280274428027442803247504Caulobacter segnis ATCC 21756 chromosome, complete genomeRNA polymerase sigma-24 factor3e-0651.2
NC_015577:383071:383071383071383628558Treponema azotonutricium ZAS-9 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0650.8
NC_010084:2171881:217729121772912177935645Burkholderia multivorans ATCC 17616 chromosome 1, completeECF subfamily RNA polymerase sigma-24 factor3e-0650.8
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor3e-0650.8
NC_014960:72737:752717527175828558Anaerolinea thermophila UNI-1, complete genomeRNA polymerase ECF-type sigma factor5e-0650.4
NC_019960:1272956:131266813126681313201534Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 14e-0650.4
NC_013061:1948365:196560719656071966182576Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor5e-0650.1
NC_009664:4696961:473045147304514731020570Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0650.1
NC_015172:1334958:135847113584711359013543Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0650.1
NC_013592:2338403:235048723504872351047561Dickeya dadantii Ech586, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0649.7