Pre_GI Gene

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Host: NC_007953 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007953:1088933 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10879801088936957Putative FecRQuickGO ontologyBLASTP
10889331089469537Sigma-24 FecIQuickGO ontologyBLASTP
10896581090128471Biopolymer transport protein ExbDTolRQuickGO ontologyBLASTP
10901591090911753MotATolQExbB proton channelQuickGO ontologyBLASTP
10909481091658711TonB proteinQuickGO ontologyBLASTP
10922731093211939Putative fumarylacetoacetate FAA hydrolaseQuickGO ontologyBLASTP
10934521094384933hypothetical proteinBLASTP
109451510957411227outer membrane porin OmpC familyQuickGO ontologyBLASTP
109613510974661332major facilitator superfamily MFS anionmetabolitecation symporterQuickGO ontologyBLASTP
1097573109937218005-oxoprolinase ATP-hydrolyzingQuickGO ontologyBLASTP
1099369110142320555-oxoprolinase ATP-hydrolyzingQuickGO ontologyBLASTP
11016701102014345hypothetical protein
11024261103058633Transcriptional regulator TetR familyQuickGO ontologyBLASTP
1103348110606827212-oxo-acid dehydrogenase E1 component homodimeric typeQuickGO ontologyBLASTP
11062211106748528Transcriptional regulator AsnC familyQuickGO ontologyBLASTP
11067671107009243hypothetical protein
110725511087691515Putative diguanylate cyclase GGDEF domainQuickGO ontologyBLASTP