Pre_GI: BLASTP Hits

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Query: NC_015848:2859145:2865525 Mycobacterium canettii CIPT 140010059, complete genome

Start: 2865525, End: 2868869, Length: 3345

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019950:2830682:2837062283706228404063345Mycobacterium canettii CIPT 140060008 complete genomePutative LuxR family transcriptional regulator01856
NC_000962:2791019:2797467279746728008803414Mycobacterium tuberculosis H37Rv, complete genomePROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)01719
NC_002945:2757821:2764268276426827676813414Mycobacterium bovis AF2122/97, complete genomeLuxR family transcriptional regulator01719
NC_009525:2802987:2809435280943528128483414Mycobacterium tuberculosis H37Ra, complete genomeLuxR family transcriptional regulator01719
NC_009565:2806000:2810784281078428141973414Mycobacterium tuberculosis F11, complete genomehypothetical transcriptional regulatory protein, luxR-family01719
NC_008769:2754828:2761274276127427646873414Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative transcriptional regulatory protein (luxR-family)01718
NC_012207:2747599:2754045275404527574583414Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative transcriptional regulatory protein01718
NC_002755:2788000:2792955279295527962963342Mycobacterium tuberculosis CDC1551, complete genometranscriptional regulator, LuxR family01718
NC_016804:2735897:2740639274063927440523414Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative transcriptional regulatory protein, LuxR family01718
NC_012522:98567:1091781091781114962319Rhodococcus opacus B4, complete genomeputative LuxR family transcriptional regulator2e-59231
NC_008271:35909:5350253502567713270Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprotein kinase/ transcriptional regulator, LuxR family1e-58229
NC_012522:3224526:3240223324022332430362814Rhodococcus opacus B4, complete genomeputative LuxR family transcriptional regulator3e-57224
NC_012522:3224526:3224526322452632277893264Rhodococcus opacus B4, complete genomeputative serine/threonine protein kinase6e-57223
NC_016111:3577572:3599142359914236023393198Streptomyces cattleya NRRL 8057, complete genomeAfsR-like regulatory protein4e-54214
NC_009142:5647737:5652066565206656544082343Saccharopolyspora erythraea NRRL 2338, complete genomeprotein kinase/transcriptional regulator, LuxR family4e-53210
NC_008278:175500:1932821932821955912310Frankia alni ACN14a, complete genomeputative transcriptional regulator8e-53209
NC_003888:1395319:1406138140613814084802343Streptomyces coelicolor A3(2), complete genomemulti-domain regulatory protein9e-52206
NC_013159:3858425:3858425385842538616073183Saccharomonospora viridis DSM 43017, complete genomepredicted ATPase2e-51205
NC_007777:1170406:1178211117821111806552445Frankia sp. CcI3, complete genometranscriptional regulator, LuxR family1e-50202
NC_019673:4687289:4697284469728447004093126Saccharothrix espanaensis DSM 44229 complete genomeProtein kinase2e-49198
NC_013757:2659930:2674458267445826773312874Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, winged helix family2e-49198
NC_014318:6395392:6399946639994664026392694Amycolatopsis mediterranei U32 chromosome, complete genomepredicted ATPase1e-48195
NC_007510:1959883:1998966199896620015992634Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, winged helix family9e-48192
NC_016582:6999074:7026400702640070305004101Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAfsR-like regulatory protein3e-47191
NC_013235:5849659:5871616587161658748973282Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, winged helix family6e-47190
NC_017186:6395435:6399989639998964021722184Amycolatopsis mediterranei S699 chromosome, complete genomeATPase2e-46188
NC_014815:2055286:2070183207018320734463264Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, winged helix family6e-46186
NC_013757:1732747:1743495174349517463262832Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, winged helix family3e-45184
NC_008268:5745620:5761830576183057645022673Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, LuxR family5e-44180
NC_015379:4426827:4424076442407644268652790Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, unclassified1e-43179
NC_013947:460398:4835324835324866183087Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, winged helix family3e-43178
NC_013947:3534209:3536416353641635391752760Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family2e-42175
NC_009485:1946000:1956702195670219596202919Bradyrhizobium sp. BTAi1 chromosome, complete genometranscriptional regulator7e-40166
NC_016943:1314500:1314500131450013177873288Blastococcus saxobsidens DD2, complete genomeMulti-domain regulatory protein2e-39165
NC_019673:3253650:3276007327600732792493243Saccharothrix espanaensis DSM 44229 complete genomeATPase-like protein6e-39163
NC_014100:449541:4747094747094775672859Caulobacter segnis ATCC 21756 chromosome, complete genomewinged helix family transcriptional regulator3e-38160
NC_011831:853433:8542868542868566252340Chloroflexus aggregans DSM 9485, complete genometranscriptional regulator, XRE family2e-35152
NC_016627:3659500:3671029367102936744903462Clostridium clariflavum DSM 19732 chromosome, complete genomeputative ATPase1e-34149
NC_008268:3418000:3423885342388534257231839Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, LuxR family2e-34148
NC_011666:2335765:2355909235590923587662858Methylocella silvestris BL2, complete genome2e-34148
NC_010512:110932:1170741170741185551482Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, winged helix family1e-33145
NC_014217:1352777:1360468136046813633112844Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, winged helix family7e-33143
NC_007492:6372900:6402638640263864054902853Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, Winged helix family9e-30133
NC_015312:61752:7863778637814442808Pseudonocardia dioxanivorans CB1190 chromosome, complete genomewinged helix family transcriptional regulator2e-29132
NC_015711:3697808:3715641371564137188173177Myxococcus fulvus HW-1 chromosome, complete genomeadenylate/guanylate cyclase domain-containing protein1e-28129
NC_020453:7826358:7855205785520578580932889Agromonas oligotrophica S58 DNA, complete genomeputative ATPase4e-27124
NC_013947:3785332:3786080378608037888242745Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family2e-26122
NC_006087:2214209:2232154223215422344032250Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, LuxR family8e-26120
NC_015379:4426827:4426827442682744283141488Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, unclassified7e-25117
NC_018681:5490963:5520274552027455227752502Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein2e-21105
NC_009767:4819000:4837476483747648406703195Roseiflexus castenholzii DSM 13941, complete genometranscriptional regulator, SARP family5e-21104
NC_015671:3211972:3226190322619032294293240Cellvibrio gilvus ATCC 13127 chromosome, complete genometranscriptional regulator, winged helix family4e-20100
NC_010676:3009980:3009980300998030114941515Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, winged helix family2e-1999
NC_014100:2782000:2782139278213927849822844Caulobacter segnis ATCC 21756 chromosome, complete genomewinged helix family transcriptional regulator9e-1790.1
NC_009142:5647737:566777056677705668258489Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator (LuxR/UhpA family)5e-1274.3
NC_009142:6199326:6200823620082362036542832Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, LuxR family8e-1273.6
NC_020302:2116468:2137332213733221388551524Corynebacterium halotolerans YIM 70093 = DSM 44683, completeATPase-like protein7e-1170.5
NC_009664:4423829:4660121466012146629882868Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR2e-0862
NC_008278:1876435:187968118796811880322642Frankia alni ACN14a, complete genomePutative two-component system response regulator3e-0862
NC_010407:2406113:242079324207932421491699Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two component system response regulator4e-0861.2
NC_016584:5305417:531971653197165320333618Desulfosporosinus orientis DSM 765 chromosome, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain5e-0860.8
NC_008596:4104476:4124109412410941268412733Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulatory protein7e-0860.5
NC_003888:7866148:7881841788184178846392799Streptomyces coelicolor A3(2), complete genometranscriptional regulator1e-0760.1
NC_013757:729986:750149750149750961813Geodermatophilus obscurus DSM 43160, complete genometwo component transcriptional regulator, LuxR family1e-0760.1
NC_008595:1176658:119346911934691194287819Mycobacterium avium 104, complete genomeadenylate and Guanylate cyclase catalytic domain protein1e-0759.7
NC_019673:3041936:305598930559893056432444Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0759.3
NC_017955:3731480:381569938156993816493795Modestobacter marinus, complete genomeLuxR family two component transcriptional regulator3e-0758.5
NC_014391:3445672:346042434604243461083660Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeresponse regulator receiver3e-0758.5
NC_015514:3911655:393605339360533936691639Cellulomonas fimi ATCC 484 chromosome, complete genomeLuxR family transcriptional regulator3e-0758.5
NC_014215:1929000:193663719366371937302666Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Two-component system response regulator2e-0758.5
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator4e-0758.2
NC_015564:2870631:2901783290178329034231641Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeregulatory protein LuxR4e-0758.2
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family4e-0758.2
NC_011894:79282:9341593415953581944Methylobacterium nodulans ORS 2060, complete genomeadenylate/guanylate cyclase6e-0757.4
NC_016626:1669477:1675600167560016771231524Burkholderia sp. YI23 plasmid byi_1p, complete sequencetwo component LuxR family transcriptional regulator7e-0757.4
NC_009664:4423829:4655577465557746583482772Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR7e-0757.4
NC_016887:2269177:229490122949012295518618Nocardia cyriacigeorgica GUH-2, complete genomeresponse regulator, two-component system8e-0757
NC_002952:2550500:255266825526682553321654Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative response regulator1e-0656.6
NC_007793:2510801:251179925117992512452654Staphylococcus aureus subsp. aureus USA300, complete genometranscriptional regulator, DegU family1e-0656.6
NC_007795:2455468:245889824588982459500603Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein1e-0656.6
NC_002953:2435667:244029424402942440947654Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative response regulator1e-0656.6
NC_002951:2448000:244823224482322448885654Staphylococcus aureus subsp. aureus COL, complete genometranscriptional regulatory protein DegU, putative1e-0656.6
NC_017342:857630:875234875234875836603Staphylococcus aureus subsp. aureus TCH60 chromosome, completeLuxR family DNA-binding response regulator1e-0656.6
NC_017338:2456000:245638824563882457041654Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeLuxR family two component transcriptional regulator1e-0656.6
NC_017337:2478877:248076724807672481369603Staphylococcus aureus subsp. aureus ED133 chromosome, completetwo-component response regulator1e-0656.6
NC_016941:2395502:239731123973112397964654Staphylococcus aureus subsp. aureus MSHR1132, complete genomeoxygen regulatory protein NreC1e-0656.6
NC_016928:2411486:241248424124842413086603Staphylococcus aureus subsp. aureus M013 chromosome, completetwo-component response regulator1e-0656.6
NC_007622:2399347:240034424003442400997654Staphylococcus aureus RF122, complete genometwo-component response regulator1e-0656.6
NC_002758:2515310:251873925187392519392654Staphylococcus aureus subsp. aureus Mu50, complete genomeresponse regulators of two-component regulatory1e-0656.6
NC_003923:2460130:246112824611282461781654Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein1e-0656.6
NC_009782:2519379:252037725203772521030654Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein1e-0656.6
NC_018000:3371829:337320133732013373881681Sinorhizobium fredii USDA 257 chromosome, complete genometwo-component system response regulator1e-0656.6
NC_017351:2489460:249105724910572491659603Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeoxygen regulatory protein nreC1e-0656.6
NC_017347:2511783:251278125127812513383603Staphylococcus aureus subsp. aureus T0131 chromosome, completeOxygen regulatory protein nreC1e-0656.6
NC_017343:2367177:237060623706062371208603Staphylococcus aureus subsp. aureus ECT-R 2, complete genometranscriptional regulatory protein degU (Protease production enhancerprotein)1e-0656.6
NC_017341:2544327:254532525453252545927603Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,LuxR family two component transcriptional regulator1e-0656.6
NC_016912:2329113:233011123301112330764654Staphylococcus aureus subsp. aureus VC40 chromosome, completeDegU family transcriptional regulator1e-0656.6
NC_013450:2463271:246426924642692464871603Staphylococcus aureus subsp. aureus ED98, complete genometranscriptional regulatory protein DegU, putative1e-0656.6
NC_009641:2513300:251673025167302517383654Staphylococcus aureus subsp. aureus str. Newman chromosome,transcriptional regulator DegU family protein1e-0656.6
NC_009632:2545419:254884825488482549501654Staphylococcus aureus subsp. aureus JH1 chromosome, completeresponse regulator receiver1e-0656.6
NC_010079:2510951:251194925119492512602654Staphylococcus aureus subsp. aureus USA300_TCH1516, completetranscriptional regulator1e-0656.6
NC_002745:2446722:244772024477202448373654Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein1e-0656.6
NC_015589:3241364:325205832520583252759702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver1e-0656.2
NC_016616:2644883:266033226603322660964633Dechlorosoma suillum PS chromosome, complete genomeresponse regulator1e-0656.2
NC_016815:1085462:110319811031981103878681Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceTranscriptional regulatory protein degU1e-0656.2
NC_017353:646195:661369661369662022654Staphylococcus lugdunensis N920143, complete genomeputative response regulator2e-0655.8
NC_009664:4696961:4699553469955347024382886Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR2e-0655.5
NC_008699:1067855:107178610717861072442657Nocardioides sp. JS614, complete genomeresponse regulator receiver3e-0655.1
NC_013947:1956923:197562619756261976273648Stackebrandtia nassauensis DSM 44728 chromosome, complete genometwo component transcriptional regulator, LuxR family3e-0655.1
NC_018750:6237875:625073962507396251332594Streptomyces venezuelae ATCC 10712, complete genometwo-component system response regulator3e-0655.1
NC_003155:7979050:798241379824137983084672Streptomyces avermitilis MA-4680, complete genometwo-component system response regulator4e-0654.7
NC_018750:1390029:139943613994361400113678Streptomyces venezuelae ATCC 10712, complete genomeDNA-binding response regulator, LuxR family4e-0654.7
NC_016111:134444:1396081396081423852778Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, luxR family4e-0654.7
NC_003888:1751179:176915617691561769827672Streptomyces coelicolor A3(2), complete genometwo-component response regulator4e-0654.7
NC_013929:8106492:811467981146798115350672Streptomyces scabiei 87.22 chromosome, complete genometwo-component response regulator4e-0654.7
NC_010511:3106418:3130007313000731319531947Methylobacterium sp. 4-46 chromosome, complete genomeTPR repeat-containing adenylate/guanylate cyclase4e-0654.7
NC_007974:1717828:171713617171361717831696Ralstonia metallidurans CH34 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family5e-0654.7
NC_013947:5682895:5684186568418656868882703Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family5e-0654.3
NC_006177:520055:533611533611534207597Symbiobacterium thermophilum IAM 14863, complete genometwo-component response regulator5e-0654.3
NC_017955:3731480:3767681376768137686971017Modestobacter marinus, complete genomeLuxR-family regulator5e-0654.3
NC_015683:2469481:247103224710322471670639Corynebacterium ulcerans BR-AD22 chromosome, complete genometwo-component system transcriptional regulator8e-0653.5
NC_014391:6710500:6714485671448567171902706Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeNB-ARC domain-containing protein8e-0653.5
NC_009664:4377777:439903043990304399665636Kineococcus radiotolerans SRS30216, complete genometwo component transcriptional regulator, LuxR family8e-0653.5
NC_013722:1905655:191070719107071911354648Xanthomonas albilineans, complete genomeputative two-component system regulatory protein, luxr family9e-0653.5
NC_015312:4658548:4661685466168546632531569Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeLuxR family transcriptional regulator9e-0653.5