Pre_GI: BLASTP Hits

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Query: NC_013716:357928:389831 Citrobacter rodentium ICC168, complete genome

Start: 389831, End: 390388, Length: 558

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014618:1809369:183324018332401833797558Enterobacter cloacae SCF1 chromosome, complete genomecupin1e-100364
NC_020064:1962172:199164219916421992199558Serratia marcescens FGI94, complete genomeputative transcriptional regulator3e-88324
NC_014306:3210311:323155932315593232116558Erwinia billingiae Eb661, complete genomeTranscriptional regulator3e-79293
NC_004129:2609189:261369426136942614242549Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein1e-29129
NC_010511:4313769:431880843188084319359552Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator3e-23107
NC_010511:871905:876281876281876832552Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator5e-22103
NC_018000:1852691:185968618596861860411726Sinorhizobium fredii USDA 257 chromosome, complete genomeXre family transcriptional regulator2e-2099
NC_020134:1328302:133941313394131339952540Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative DNA-binding protein1e-2099
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator1e-1996.3
NC_009718:1411793:143010814301081430635528Fervidobacterium nodosum Rt17-B1, complete genomecupin 2 domain-containing protein4e-1787.8
NC_006510:2910000:291967829196782920220543Geobacillus kaustophilus HTA426, complete genomehypothetical protein7e-1580.1
NC_010175:2925084:294094629409462941581636Chloroflexus aurantiacus J-10-fl, complete genomeCupin 2 conserved barrel domain protein8e-1579.7
NC_012032:2925000:293613129361312936766636Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, XRE family8e-1579.7
NC_016048:3856665:387693238769323877567636Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-1479
NC_014328:1286407:130205613020561302601546Clostridium ljungdahlii ATCC 49587 chromosome, complete genometranscriptional regulator5e-1477.4
UCMB5137:1:101211012110666546Bacillus atrophaeus UCMB-5137unknown2e-1375.5
NC_017223:3345902:334953933495393350378840Bordetella pertussis CS chromosome, complete genomeMerR family transcriptional regulator2e-1375.5
NC_002929:3305682:330931933093193310158840Bordetella pertussis Tohama I, complete genomeprobable MerR-family transcriptional regulator2e-1375.5
NC_015723:2116090:211951321195132120103591Cupriavidus necator N-1 chromosome 2, complete sequenceN-carbamoyl-L-amino acid hydrolase AmaB3e-1374.7
NC_007907:4859735:487526948752694875916648Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1271.6
NC_007948:3502843:352327835232783523883606Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family with cupin sensor domain2e-1168.9
NC_009617:1487110:149075414907541491308555Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein9e-1166.6
NC_009089:1283000:131939013193901319941552Clostridium difficile 630, complete genomeputative transcriptional regulator1e-1066.2
NC_017273:352150:357368357368357946579Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completecupin4e-1064.3
NC_015500:900807:900807900807901394588Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein6e-1063.9
NC_007907:4859735:487593148759314876476546Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-1063.5
NC_014328:2518081:253808325380832538637555Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein8e-1063.2
NC_014960:1697818:171901417190141719634621Anaerolinea thermophila UNI-1, complete genomehypothetical protein2e-0962.4
NC_014654:2311818:232518923251892325725537Halanaerobium sp. 'sapolanicus' chromosome, complete genomeCupin 2 conserved barrel domain protein2e-0962
NC_014118:2417838:242979424297942430366573Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family2e-0962
NC_016630:1385719:139310813931081393626519Filifactor alocis ATCC 35896 chromosome, complete genomeCro/CI family transcriptional regulator2e-0961.6
NC_014640:5047201:504847650484765049030555Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein5e-0960.8
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein7e-0960.1
NC_016025:552000:561697561697562284588Candidatus Chloracidobacterium thermophilum B chromosome chromosomeputative transcriptional regulator1e-0859.7
NC_009659:997779:100550010055001006123624Janthinobacterium sp. Marseille chromosome, complete genomeCro/CI family transcriptional regulator2e-0859.3
NC_015573:2463123:248380024838002484105306Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0858.5
NC_011094:1726000:173106917310691731671603Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, Cro/CI family protein2e-0858.5
NC_003910:4234000:424542542454254246024600Colwellia psychrerythraea 34H, complete genomeDNA-binding protein3e-0858.5
NC_007644:280000:290061290061290366306Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family3e-0858.2
NC_012667:1045782:106175010617501062373624Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein3e-0858.2
NC_003198:1336894:135202213520221352624603Salmonella enterica subsp. enterica serovar Typhi str. CT18,conserved hypothetical DNA-binding protein3e-0857.8
NC_004631:1623511:162855816285581629160603Salmonella enterica subsp. enterica serovar Typhi Ty2, completeconserved hypothetical DNA-binding protein3e-0857.8
NC_016002:2652500:265727326572732657857585Pseudogulbenkiania sp. NH8B, complete genomeXRE family transcriptional regulator4e-0857.8
NC_016818:3736213:375836837583683758922555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator4e-0857.8
NC_020063:3690308:373506937350693735671603Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator6e-0857.4
NC_006905:1766000:177105217710521771654603Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator1e-0756.2
NC_015567:2328782:233007923300792330642564Serratia sp. AS9 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0756.2
NC_015566:2328771:233006823300682330631564Serratia sp. AS12 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0756.2
NC_010424:697187:744858744858745595738Candidatus Desulforudis audaxviator MP104C, complete genomeputative prophage repressor2e-0755.8
NC_011147:1267005:128212412821241282726603Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-0755.8
NC_006511:1273162:128828112882811288883603Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCconserved hypothetical DNA-binding protein2e-0755.8
NC_011149:1429523:144464314446431445245603Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, Cro/CI family2e-0755.5
NC_003888:7561923:756287275628727563450579Streptomyces coelicolor A3(2), complete genomeDNA-binding protein3e-0755.1
NC_007650:2901751:295029503558609Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein3e-0754.7
NC_011080:1750000:175424417542441754846603Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, Cro/CI family4e-0754.7
NC_015276:2769000:277194627719462772557612Marinomonas mediterranea MMB-1 chromosome, complete genomehelix-turn-helix domain protein4e-0754.3
NC_003910:2588000:260174326017432602339597Colwellia psychrerythraea 34H, complete genomeDNA-binding protein4e-0754.3
NC_008701:391216:3967843967843983341551Pyrobaculum islandicum DSM 4184, complete genometranscriptional regulator, XRE family4e-0754.3
NC_004461:779000:788650788650789189540Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein6e-0753.9
NC_003197:1753663:175788917578891758491603Salmonella typhimurium LT2, complete genomeputative transcriptional regulator6e-0753.9
NC_016810:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein6e-0753.9
NC_016856:1763640:176786617678661768468603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator6e-0753.9
NC_016857:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator6e-0753.9
NC_016860:1752000:175558017555801756182603Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator6e-0753.9
NC_016863:1711832:171605817160581716660603Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator6e-0753.9
NC_017046:1709578:171462517146251715227603Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA-binding protein6e-0753.9
NC_020064:79422:976759767598283609Serratia marcescens FGI94, complete genomeputative transcriptional regulator6e-0753.9
NC_014831:1843835:186641118664111867175765Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCupin 2 conserved barrel domain protein5e-0753.9
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein7e-0753.5
NC_015573:1979202:199861019986101999377768Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0753.5
NC_014966:795311:815631815631816254624Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator8e-0753.5
NC_009075:3113393:294829483556609Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA-binding protein1e-0653.1
NC_009078:3087759:294829483556609Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA-binding/cupin domain protein1e-0653.1
NC_007435:1825741:184202518420251842633609Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein1e-0653.1
NC_009253:897684:934741934741935361621Desulfotomaculum reducens MI-1 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0652.8
NC_008148:2498000:252032625203262520988663Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, XRE family with cupin sensor1e-0652.8
NC_009617:4805413:480886648088664809417552Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeXRE family transcriptional regulator1e-0652.8
NC_014652:420457:457158457158457475318Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, xre family2e-0652.4
NC_009079:2339756:408640864694609Burkholderia mallei NCTC 10247 chromosome I, complete sequenceDNA-binding protein2e-0652.4
NC_006351:3159630:294629463554609Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding protein2e-0652.4
NC_008835:1483237:149940114994011500009609Burkholderia mallei NCTC 10229 chromosome I, complete sequenceDNA-binding protein2e-0652.4
NC_008784:1151305:116827711682771168885609Burkholderia mallei SAVP1 chromosome I, complete sequenceDNA-binding protein2e-0652.4
NC_006349:2311817:408640864694609Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceDNA-binding protein2e-0652.4
NC_016816:4129299:415585641558564156458603Pantoea ananatis LMG 5342, complete genomeB3/4 domain-containing protein2e-0652.4
NC_016048:2907702:293945829394582940024567Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-0652.4
NC_007644:1638083:166268516626851663587903Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family1e-0652.4
NC_016511:2321999:232953423295342330118585Propionibacterium acnes TypeIA2 P.acn31 chromosome, completecupin domain protein2e-0652
NC_016516:2314115:232039223203922320976585Propionibacterium acnes TypeIA2 P.acn33 chromosome, completecupin domain protein2e-0652
NC_016048:3261166:326466232646623264955294Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-0652
NC_016512:2322598:232886723288672329460594Propionibacterium acnes TypeIA2 P.acn17 chromosome, completecupin domain protein2e-0652
NC_012034:2555447:257925725792572579574318Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, XRE family3e-0651.6
NC_009253:897684:951074951074951394321Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator3e-0651.6
NC_004557:1553000:155369415536941554401708Clostridium tetani E88, complete genomeputative transcriptional regulatory protein3e-0651.6
NC_014039:2320307:232631423263142327180867Propionibacterium acnes SK137 chromosome, complete genomecupin domain protein3e-0651.6
NC_006085:2384892:239089723908972391763867Propionibacterium acnes KPA171202, complete genomeputative transcriptional regulator2e-0651.6
NC_010103:1777000:1780871178087117828231953Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein4e-0651.2
NC_010167:1287000:1290803129080312927551953Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein4e-0651.2
NC_006932:1795500:1799556179955618015081953Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, Cro/CI family4e-0651.2
NC_010742:1794000:1797845179784517997971953Brucella abortus S19 chromosome 1, complete sequencetranscriptional regulator, Cro/CI family4e-0651.2
NC_016645:279232:3038763038763054201545Pyrobaculum sp. 1860 chromosome, complete genometranscriptional regulator, XRE family4e-0651.2
NC_012034:2555447:257888725788872579120234Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, XRE family5e-0650.8
NC_014721:2135500:215777821577782158167390Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehelix-turn-helix domain protein6e-0650.4
NC_009654:2940278:294247229424722943083612Marinomonas sp. MWYL1, complete genomeXRE family transcriptional regulator9e-0650.1