Pre_GI Gene

Some Help

Host: NC_012667 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012667:1045782 Vibrio cholerae MJ-1236 chromosome 2, complete genome

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10457821046411630acetyltransferaseQuickGO ontologyBLASTP
10471461047397252hypothetical proteinBLASTP
10476531047835183hypothetical proteinBLASTP
10481991048387189hypothetical proteinBLASTP
10496341050596963integron integrase IntI4QuickGO ontologyBLASTP
1050678105103135450S ribosomal protein L20QuickGO ontologyBLASTP
1051073105126719550S ribosomal protein L35QuickGO ontologyBLASTP
10513711051760390translation initiation factor 3QuickGO ontologyBLASTP
105192610538541929threonyl-tRNA synthetaseQuickGO ontologyBLASTP
10544751055146672hypothetical proteinBLASTP
10551461055676531uropathogenic specific proteinQuickGO ontologyBLASTP
105619710574501254hypothetical proteinBLASTP
10577261058706981IS5 transposaseQuickGO ontologyBLASTP
105875210597561005phage IntegraseQuickGO ontologyBLASTP
106037610615061131aminomethyltransferase glycine cleavage system T proteinQuickGO ontologyBLASTP
10617501062373624hypothetical proteinBLASTP
106276110640681308serine hydroxymethyltransferaseQuickGO ontologyBLASTP