Pre_GI: BLASTP Hits

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Query: NC_012660:5571500:5591945 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 5591945, End: 5592478, Length: 534

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:2642881:266974526697452670242498Pseudomonas fluorescens F113 chromosome, complete genomeprotein CheD23e-54211
NC_008570:1094442:111124211112421111712471Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative chemotaxis protein CheD3e-34144
NC_015138:3927411:392949639294963929978483Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeCheD1e-26119
NC_008752:3902637:391887139188713919326456Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-25113
NC_021184:2238500:224845222484522248952501Desulfotomaculum gibsoniae DSM 7213, complete genomechemotaxis protein6e-1683.6
NC_014328:1046958:105146610514661051954489Clostridium ljungdahlii ATCC 49587 chromosome, complete genomechemotaxis protein2e-1581.6
NC_015636:1455700:146394414639441464405462Methanothermococcus okinawensis IH1 chromosome, complete genomeCheD2e-1478.2
NC_000961:435489:444354444354444842489Pyrococcus horikoshii OT3, complete genomehypothetical protein3e-1477.8
NC_017095:166896:191016191016191495480Fervidobacterium pennivorans DSM 9078 chromosome, complete genomechemotaxis protein4e-1477.4
NC_015474:1035834:104675510467551047246492Pyrococcus sp. NA2 chromosome, complete genomechemoreceptor glutamine deamidase CheD6e-1477
NC_011653:1728000:174570517457051746187483Thermosipho africanus TCF52B, complete genomechemoreceptor glutamine deamidase CheD2e-1375.5
NC_000868:1502276:150970415097041510195492Pyrococcus abyssi GE5, complete genomechemotaxis protein ched2e-1375.5
NC_004460:1237129:125917712591771259821645Vibrio vulnificus CMCP6 chromosome II, complete sequenceChemotaxis protein4e-1374.3
NC_005140:1820970:184349318434931844137645Vibrio vulnificus YJ016 chromosome II, complete sequencechemotaxis protein5e-1373.9
NC_008346:983816:996088996088996573486Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeCheD, stimulates methylation of MCP proteins5e-1373.9
NC_008593:1060548:107352910735291074017489Clostridium novyi NT, complete genomechemotaxis protein CheD6e-1373.6
NC_010516:2900057:292037129203712920859489Clostridium botulinum B1 str. Okra, complete genomechemotaxis protein CheD1e-1272.4
NC_010520:2937981:296072729607272961215489Clostridium botulinum A3 str. Loch Maree, complete genomechemotaxis protein CheD1e-1272.4
NC_012563:3090954:311531431153143115802489Clostridium botulinum A2 str. Kyoto, complete genomechemotaxis protein CheD1e-1272.4
NC_009495:2876865:290122529012252901713489Clostridium botulinum A str. ATCC 3502 chromosome, complete genomechemoreceptor glutamine deamidase CheD1e-1272.4
NC_009697:2790277:281463728146372815125489Clostridium botulinum A str. ATCC 19397 chromosome, completechemoreceptor glutamine deamidase CheD1e-1272.4
NC_009698:2727203:275156327515632752051489Clostridium botulinum A str. Hall chromosome, complete genomechemoreceptor glutamine deamidase CheD1e-1272.4
NC_009699:2901497:292490429249042925392489Clostridium botulinum F str. Langeland chromosome, complete genomechemoreceptor glutamine deamidase CheD1e-1272.4
NC_012658:2930244:295279929527992953287489Clostridium botulinum Ba4 str. 657 chromosome, complete genomechemoreceptor glutamine deamidase CheD1e-1272.4
NC_017297:2905138:292504129250412925529489Clostridium botulinum F str. 230613 chromosome, complete genomechemotaxis protein CheD1e-1272.4
NC_020389:1346358:135174813517481352227480Methanosarcina mazei Tuc01, complete genomeChemotaxis protein CheD2e-1272
NC_003901:1568000:157669115766911577170480Methanosarcina mazei Go1, complete genomechemoreceptor glutamine deamidase CheD2e-1272
NC_013849:933913:940008940008940478471Ferroglobus placidus DSM 10642 chromosome, complete genomeCheD2e-1271.6
NC_021182:2921000:294471129447112945202492Clostridium pasteurianum BC1, complete genomechemotaxis protein8e-1269.7
NC_015707:705628:706233706233706715483Thermotoga thermarum DSM 5069 chromosome, complete genomeCheD3e-1168.2
NC_007298:778723:803115803115803720606Dechloromonas aromatica RCB, complete genomeCheD3e-1167.8
NC_013741:1144592:116913511691351169605471Archaeoglobus profundus DSM 5631, complete genomeCheD, stimulates methylation of MCP protein5e-1167.4
NC_014377:1089894:109874010987401099225486Thermosediminibacter oceani DSM 16646 chromosome, complete genomeCheD5e-1167.4
NC_011832:1949717:196852919685291969023495Candidatus Methanosphaerula palustris E1-9c, complete genomeCheD2e-1065.5
NC_015497:2997275:301504130150413015661621Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeCheD2e-1065.1
NC_000917:940088:945172945172945645474Archaeoglobus fulgidus DSM 4304, complete genomehypothetical protein2e-1065.1
NC_012968:1352463:135673813567381357346609Methylotenera mobilis JLW8, complete genomeCheD, stimulates methylation of MCP protein7e-1063.5
NC_018607:921923:950130950130950723594Brachyspira pilosicoli B2904 chromosome, complete genomechemotaxis protein CheD2e-0962
NC_014330:505412:514323514323514916594Brachyspira pilosicoli 95/1000 chromosome, complete genomechemotaxis protein CheD2e-0962
NC_018604:1943561:194814019481401948733594Brachyspira pilosicoli WesB complete genomechemotaxis protein CheD2e-0962
NC_019908:121178:149850149850150443594Brachyspira pilosicoli P43/6/78 chromosome, complete genomechemotaxis protein CheD2e-0962
NC_015222:1607757:161330516133051613916612Nitrosomonas sp. AL212 chromosome, complete genomeCheD4e-0960.8
NC_010001:3266561:327629132762913276776486Clostridium phytofermentans ISDg, complete genomeCheD5e-0960.5
NC_017243:1698000:171175617117561712349594Brachyspira intermedia PWS/A chromosome, complete genomechemotaxis protein CheD6e-0960.1
NC_012225:569590:583560583560584153594Brachyspira hyodysenteriae WA1, complete genomechemotaxis protein CheD6e-0960.1
NC_015391:2099472:210685221068522107334483Carnobacterium sp. 17-4 chromosome, complete genomesequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR2e-0858.9
NC_014323:4792048:483467548346754835286612Herbaspirillum seropedicae SmR1 chromosome, complete genomechemoreceptor glutamine deamidase1e-0755.8
NC_013173:1609123:161501116150111615547537Desulfomicrobium baculatum DSM 4028, complete genomeCheD, stimulates methylation of MCP proteins2e-0755.1
NC_019892:376000:395885395885396340456Singulisphaera acidiphila DSM 18658 chromosome, complete genomechemotaxis protein8e-0753.1
NC_009049:1125681:113783011378301138429600Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceCheD, stimulates methylation of MCP proteins3e-0651.6
NC_009428:1827352:183982518398251840424600Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomechemoreceptor glutamine deamidase CheD3e-0651.2