Pre_GI: BLASTP Hits

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Query: NC_009708:2537557:2555953 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 2555953, End: 2556969, Length: 1017

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007712:1954808:1974024197402419750401017Sodalis glossinidius str. 'morsitans', complete genomephage integrase7e-139493
CP002797:4812799:4826760482676048278061047Escherichia coli NA114, complete genomePutative integrase1e-130466
NC_016816:2953530:2977372297737229783941023Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family7e-126450
NC_012779:2127542:2148941214894121499511011Edwardsiella ictaluri 93-146, complete genomesite-specific recombinase, phage integrase family2e-125448
NC_006155:2116834:2128303212830321293251023Yersinia pseudotuberculosis IP 32953, complete genomeputative integrase4e-124444
NC_005810:1663672:167309716730971673675579Yersinia pestis biovar Microtus str. 91001, complete genomeintegrase2e-103375
NC_008149:2517538:253577225357722536329558Yersinia pestis Nepal516, complete genomehypothetical protein5e-99361
NC_009381:1414985:142000214200021420559558Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-98359
NC_008150:1384102:139870513987051399262558Yersinia pestis Antiqua, complete genomehypothetical protein2e-98359
NC_003143:2101902:211562621156262116141516Yersinia pestis CO92, complete genomehypothetical protein2e-90332
NC_017168:3535786:354487235448723545387516Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-90332
NC_017265:2306500:232086923208692321384516Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Integrase2e-90332
NC_007712:2028500:2057823205782320588451023Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase3e-89328
NC_020181:2097066:2117522211752221185741053Enterobacter aerogenes EA1509E, complete genomePutative integrase8e-80297
NC_011294:2053991:205795920579592058948990Salmonella enterica subsp. enterica serovar Enteritidis strphage integrase1e-78293
NC_011205:2180598:218594621859462186935990Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase protein2e-78292
NC_007712:1712667:171266717126671713602936Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase5e-72271
NC_007712:1926500:193080019308001931645846Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase8e-71267
NC_015942:403296:4159944159944170011008Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase family protein1e-42174
NC_014837:1570500:157833915783391578668330Pantoea sp. At-9b chromosome, complete genome5e-35148
NC_010634:2124185:213599021359902136214225Yersinia pseudotuberculosis PB1/+, complete genomephage integrase family site specific recombinase7e-29128
NC_017265:2306500:232127223212722321541270Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-27124
NC_017168:3535786:354532035453203545544225Yersinia pestis A1122 chromosome, complete genomephage integrase family site specific recombinase9e-27121
NC_010159:2128157:214251321425132142737225Yersinia pestis Angola, complete genome9e-27121
NC_011770:860944:8639658639658650141050Pseudomonas aeruginosa LESB58, complete genomeIntegrase3e-25116
NC_017986:4931104:4946514494651449475211008Pseudomonas putida ND6 chromosome, complete genomephage integrase1e-22107
NC_008027:2331617:2337757233775723388061050Pseudomonas entomophila L48, complete genomesite-specific recombinase, integrase family2e-22107
NC_017033:1052000:1053148105314810541671020Frateuria aurantia DSM 6220 chromosome, complete genomesite-specific recombinase XerC1e-21104
NC_012724:359444:3687393687393697581020Burkholderia glumae BGR1 chromosome 1, complete genomePhage-related integrase4e-21102
NC_014722:846084:8501788501788513681191Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein5e-21102
NC_012724:359444:3783543783543793821029Burkholderia glumae BGR1 chromosome 1, complete genomePhage integrase:Phage integrase, N-terminal SAM-like protein3e-2099.8
NC_007005:3414579:3419554341955434205881035Pseudomonas syringae pv. syringae B728a, complete genomePhage integrase:Phage integrase, N-terminal SAM-like7e-2098.2
NC_017986:4885979:4888798488879848898621065Pseudomonas putida ND6 chromosome, complete genomeintegrase2e-1996.7
NC_012660:3689223:370301937030193703990972Pseudomonas fluorescens SBW25 chromosome, complete genomeintegrase (pseudogene)2e-1996.7
NC_002947:4484824:449569044956904496649960Pseudomonas putida KT2440, complete genomesite-specific recombinase, phage integrase family4e-1789.4
NC_003902:3544743:3558999355899935601981200Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase7e-1788.2
NC_009654:615504:6208096208096219241116Marinomonas sp. MWYL1, complete genomehypothetical protein4e-1685.9
NC_011770:2690501:2690501269050126915261026Pseudomonas aeruginosa LESB58, complete genomesite-specific recombinase, phage integrase family1e-1584.3
NC_010511:4313769:4325412432541243264611050Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein3e-1582.8
NC_005773:5636606:5655009565500956561571149Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH06, site-specific recombinase, phage integrase family5e-1479
NC_005773:176885:1914781914781926261149Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family1e-1377.4
NC_010002:5143869:5157818515781851588461029Delftia acidovorans SPH-1, complete genomeintegrase family protein2e-1377
NC_007494:714525:7351117351117362321122Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative integrase2e-1377
NC_005773:5636606:5641595564159556427431149Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH06, site-specific recombinase, phage integrase family3e-1376.3
NC_010717:3564955:3570700357070035717281029Xanthomonas oryzae pv. oryzae PXO99A, complete genomesite-specific recombinase, phage integrase family3e-1376.3
NC_003919:3060484:3093992309399230952331242Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related integrase5e-1375.5
NC_009053:553298:5572235572235582631041Actinobacillus pleuropneumoniae L20, complete genomepredicted phage integrase family protein6e-1375.5
NC_007434:1712000:1764416176441617655161101Burkholderia pseudomallei 1710b chromosome I, complete sequencePhage integrase family5e-1168.9
NC_013446:4045000:4052312405231240533461035Comamonas testosteroni CNB-2, complete genomehypothetical protein1e-1067.8
NC_010645:369408:4026334026334036671035Bordetella avium 197N, complete genomeintegrase2e-1067
NC_013716:1138441:115119811511981151500303Citrobacter rodentium ICC168, complete genome2e-1066.6
NC_010508:451184:461527461527462063537Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence3e-1066.6
NC_017986:2985514:299417429941742994953780Pseudomonas putida ND6 chromosome, complete genomesite-specific recombinase2e-0963.5
NC_009952:366959:3847653847653859581194Dinoroseobacter shibae DFL 12, complete genomephage integrase family protein4e-0962.8
NC_007508:4476726:448916944891694489969801Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative phage-related integrase (fragment)6e-0962
NC_014972:480355:4934964934964946591164Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein6e-0962
NC_009656:2663387:266807926680792668627549Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase family protein1e-0860.8
NC_011894:6382636:6386877638687763879111035Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein1e-0860.8
NC_014664:3003633:3019218301921830202761059Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeintegrase family protein3e-0859.7
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein4e-0859.3
NC_013119:942079:9420799420799431041026Brucella microti CCM 4915 chromosome 1, complete sequencesite-specific recombinase, phage integrase family8e-0858.2
NC_006932:956805:9568059568059578301026Brucella abortus biovar 1 str. 9-941 chromosome I, completesite-specific recombinase, phage integrase family1e-0757.8
NC_010103:936250:9362509362509372751026Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein1e-0757.8
NC_004310:937800:9378009378009388251026Brucella suis 1330 chromosome I, complete sequencesite-specific recombinase, phage integrase family1e-0757.8
NC_010742:955104:9551049551049561291026Brucella abortus S19 chromosome 1, complete sequencePhage integrase1e-0757.8
NC_010169:957565:9575659575659585901026Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein1e-0757.8
NC_017246:956868:956868956868957779912Brucella melitensis M5-90 chromosome chromosome I, completephage-related integrase1e-0757.8
NC_016778:96792:1160681160681170931026Brucella canis HSK A52141 chromosome 1, complete sequenceintegrase1e-0757.8
NC_016795:1441024:1460297146029714613221026Brucella abortus A13334 chromosome 1, complete sequenceintegrase1e-0757.8
NC_016797:937753:9377539377539387781026Brucella suis VBI22 chromosome I, complete sequencephage integrase family site specific recombinase1e-0757.8
NC_017251:937786:9377869377869388111026Brucella suis 1330 chromosome I, complete genomephage integrase family site specific recombinase1e-0757.8
NC_012441:956609:9566099566099576341026Brucella melitensis ATCC 23457 chromosome I, complete sequencephage-related integrase1e-0757.8
NC_017244:956554:9565549565549575791026Brucella melitensis M28 chromosome chromosome 1, complete sequencephage-related integrase1e-0757.8
NC_017248:953131:9531319531319541561026Brucella melitensis NI chromosome chromosome I, complete sequencephage integrase family site specific recombinase1e-0757.8
NC_003317:1030220:1049498104949810505081011Brucella melitensis 16M chromosome I, complete sequenceINTEGRASE/RECOMBINASE1e-0757.8
NC_013132:7954000:7968218796821879694891272Chitinophaga pinensis DSM 2588, complete genomeintegrase family protein2e-0757
NC_008043:615049:6341046341046353391236Silicibacter sp. TM1040 mega plasmid, complete sequencephage integrase3e-0756.6
NC_011770:2499432:2540392254039225415041113Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative3e-0756.2
NC_016609:4233701:4271948427194842730391092Niastella koreensis GR20-10 chromosome, complete genomeintegrase family protein5e-0755.5
NC_010067:892729:914941914941915159219Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-0755.1
NC_008686:2417000:242338424233842424307924Paracoccus denitrificans PD1222 chromosome 1, complete sequencephage integrase family protein1e-0654.3
NC_010501:4379920:4392912439291243939341023Pseudomonas putida W619, complete genomeintegrase family protein1e-0654.3
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase2e-0653.5
NC_015554:1215401:1224805122480512260791275Alteromonas sp. SN2 chromosome, complete genomeintegrase family protein3e-0653.1
NC_013364:2898964:2916736291673629178061071Escherichia coli O111:H- str. 11128, complete genomeputative integrase7e-0651.6