Pre_GI: BLASTP Hits

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Query: NC_009512:2238437:2243393 Pseudomonas putida F1, complete genome

Start: 2243393, End: 2244109, Length: 717

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:47504:604376043761057621Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase XerC6e-88323
NC_020209:47504:858688586886488621Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase XerC2e-87322
NC_020829:940692:982480982480983100621Pseudomonas denitrificans ATCC 13867, complete genomesite-specific recombinase XerC5e-86317
NC_009434:3611738:368162936816293682249621Pseudomonas stutzeri A1501, complete genomephage integrase family site specific recombinase3e-85314
NC_014539:743523:750816750816751442627Burkholderia sp. CCGE1003 chromosome 1, complete sequenceintegrase family protein6e-72270
NC_015572:2186394:220779522077952208418624Methylomonas methanica MC09 chromosome, complete genomeintegrase family protein2e-71268
NC_012792:962292:971437971437972060624Variovorax paradoxus S110 chromosome 2, complete genomeintegrase family protein1e-70266
NC_015942:355944:362190362190362819630Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase family protein4e-70264
NC_007336:66000:825458254583171627Ralstonia eutropha JMP134 megaplasmid, complete sequencePhage integrase4e-69261
NC_010170:4739925:475923847592384759852615Bordetella petrii, complete genomehypothetical protein1e-68259
NC_014394:1626699:163772816377281638342615Gallionella capsiferriformans ES-2 chromosome, complete genomeintegrase family protein1e-68259
NC_017075:1970168:197925419792541979877624Rubrivivax gelatinosus IL144, complete genomephage integrase family protein9e-68256
NC_013446:2164974:218941721894172190040624Comamonas testosteroni CNB-2, complete genomephage integrase2e-67255
NC_014910:2779573:278745227874522788075624Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein3e-67254
NC_015563:4093650:410572541057254106348624Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein7e-67253
NC_008702:2520500:252684025268402527454615Azoarcus sp. BH72, complete genomeputative Tyrosine recombinase xerD1e-64246
NC_016002:2946702:296022929602292960843615Pseudogulbenkiania sp. NH8B, complete genomephage integrase family protein6e-64243
NC_014153:2077647:208438620843862085012627Thiomonas intermedia K12 chromosome, complete genomeintegrase family protein3e-61234
NC_009438:236424:236424236424237026603Shewanella putrefaciens CN-32 chromosome, complete genomephage integrase family protein6e-60230
NC_009778:1222273:123099312309931231595603Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-59229
NC_016816:4129299:415125441512544151856603Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family4e-58224
NC_010511:871905:881963881963882592630Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein8e-58223
NC_013956:1762171:179168017916801792282603Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein9e-58223
NC_008740:3520500:355204135520413552655615Marinobacter aquaeolei VT8, complete genomephage integrase family protein2e-57221
NC_017047:2042346:206242220624222063024603Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-57221
NC_017506:4380196:440114444011444401758615Marinobacter adhaerens HP15 chromosome, complete genomephage integrase family protein7e-57220
NC_011757:3540992:354603435460343546663630Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein5e-56217
NC_012988:769981:823391823391824020630Methylobacterium extorquens DM4, complete genomeDNA integration/recombination/inversion protein, site-specific recombinase, phage integrase family1e-55216
NC_010172:798923:848604848604849233630Methylobacterium extorquens PA1, complete genomeintegrase family protein2e-55215
NC_011757:5048714:507994450799445080573630Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein3e-55214
NC_011004:4073916:410016341001634100795633Rhodopseudomonas palustris TIE-1, complete genomeintegrase family protein1e-54213
NC_011751:3048490:307718430771843077864681Escherichia coli UMN026 chromosome, complete genomesite-specific recombinase, phage integrase family1e-54213
NC_008043:86470:913399133991971633Silicibacter sp. TM1040 mega plasmid, complete sequencephage integrase3e-54211
NC_010510:339879:339879339879340511633Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein9e-54209
NC_010510:339879:352204352204352836633Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein2e-53208
NC_007722:851129:863700863700864338639Erythrobacter litoralis HTCC2594, complete genomephage integrase family protein9e-53206
NC_009952:2752500:275627227562722756904633Dinoroseobacter shibae DFL 12, complete genomehypothetical protein2e-52206
NC_008314:477722:499873499873500256384Ralstonia eutropha H16 chromosome 2, complete sequencefragmented site-specific recombinase XerC/XerD5e-51201
NC_017075:1869326:189689218968921897272381Rubrivivax gelatinosus IL144, complete genomephage integrase family protein4e-46184
NC_016626:1699500:172012117201211720462342Burkholderia sp. YI23 plasmid byi_1p, complete sequenceintegrase family protein2e-45182
NC_014012:3812754:382801038280103828606597Shewanella violacea DSS12, complete genomesite-specific recombinase, phage integrase family8e-42170
NC_009092:261778:270161270161270757597Shewanella loihica PV-4, complete genomephage integrase family protein5e-40164
NC_017047:2957957:296663329666332967157525Rahnella aquatilis HX2 chromosome, complete genomeintegrase2e-37155
NC_014258:42262:537175371754085369Pantoea vagans C9-1 plasmid pPag3, complete sequencehypothetical protein8e-33140
NC_007404:387827:395122395122395433312Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein4e-31134
NC_020260:2725201:273642827364282736793366Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-29127
NC_010511:871905:876911876911877126216Methylobacterium sp. 4-46 chromosome, complete genome7e-23107
NC_004460:708416:725319725319725558240Vibrio vulnificus CMCP6 chromosome II, complete sequenceIntegrase3e-22105
NC_008314:477722:505403505403505858456Ralstonia eutropha H16 chromosome 2, complete sequencetruncated site-specific recombinase8e-21100
NC_008314:477722:505224505224505406183Ralstonia eutropha H16 chromosome 2, complete sequenceTruncated1e-1687
NC_010511:4696868:474309747430974743288192Methylobacterium sp. 4-46 chromosome, complete genome2e-1375.9
NC_013766:679906:692805692805693347543Listeria monocytogenes 08-5578 chromosome, complete genomeprophage LambdaSa2, site-specific recombinase, phage integrase family4e-1374.7
NC_011883:2680380:270035627003562700949594Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein5e-1374.7
NC_011883:2680380:269246126924612693054594Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein5e-1374.7
NC_012796:3374911:342491734249173425474558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase5e-1374.7
NC_012796:1645856:166448516644851665042558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase3e-1272
UCMB5137:1522159:153732315373231537868546Bacillus atrophaeus UCMB-5137putative bacteriophage integrase5e-1271.2
NC_020207:1614000:162429216242921624864573Enterococcus faecium NRRL B-2354, complete genomesite-specific recombinase6e-1271.2
NC_012796:3600630:362703436270343627591558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase7e-1270.9
NC_012563:1681639:170013117001311700736606Clostridium botulinum A2 str. Kyoto, complete genomephage integrase family protein6e-1270.9
NC_012796:985000:998898998898999455558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase1e-1170.1
NC_012796:3600630:361445136144513615008558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase5e-1168.2
NC_016052:2335648:234426723442672344818552Tetragenococcus halophilus NBRC 12172, complete genomeputative site-specific recombinase5e-1167.8
NC_014500:894136:904367904367904684318Dickeya dadantii 3937 chromosome, complete genomeputative recombinase7e-1167.4
NC_008529:887008:942654942654943220567Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeIntegrase7e-1167.4
NC_008529:906576:916198916198916764567Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeIntegrase7e-1167.4
NC_008529:887008:916198916198916764567Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeIntegrase7e-1167.4
NC_008529:918277:942654942654943220567Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeIntegrase7e-1167.4
NC_008529:906576:942654942654943220567Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeIntegrase7e-1167.4
UCMB5137:1522159:153330715333071533849543Bacillus atrophaeus UCMB-5137site-specific recombinase, phage integrase family protein1e-1067
NC_012925:1357783:136497613649761365518543Streptococcus suis P1/7, complete genomephage integrase family protein1e-1067
NC_012924:1446190:145338314533831453925543Streptococcus suis SC84, complete genomephage integrase family protein1e-1067
NC_012926:1496510:150370315037031504245543Streptococcus suis BM407 chromosome, complete genomephage integrase family protein1e-1067
NC_012796:1049034:109984510998451100402558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase9e-1167
NC_009443:1445936:145312714531271453699573Streptococcus suis 98HAH33, complete genomeprophage LambdaSa2, site-specific recombinase phage integrase family protein1e-1066.6
NC_009442:1446508:145370114537011454273573Streptococcus suis 05ZYH33 chromosome, complete genomeprophage LambdaSa2, site-specific recombinase phage integrase family protein1e-1066.6
NC_014916:22644:437804378044349570Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequenceintegrase family protein2e-1066.2
NC_014844:511552:517143517143517697555Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeintegrase family protein2e-1065.9
NC_004116:1827351:185300518530051853547543Streptococcus agalactiae 2603V/R, complete genomeprophage LambdaSa2, site-specific recombinase, phage integrase family3e-1065.5
NC_012796:77071:953999539995956558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase9e-1063.9
NC_003485:296140:308140308140308715576Streptococcus pyogenes MGAS8232, complete genomehypothetical protein9e-1063.9
NC_004606:1107500:113322111332211133796576Streptococcus pyogenes SSI-1, complete genomeputative integrase/recombinase, XerC/XerD family8e-1063.9
NC_004070:747146:762960762960763535576Streptococcus pyogenes MGAS315, complete genomeputative recombinase - phage associated8e-1063.9
NC_012108:2159230:216676321667632167356594Desulfobacterium autotrophicum HRM2, complete genomesite-specific recombinase/integrase XerD1e-0963.5
NC_012796:3600630:364833536483353648892558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase1e-0963.5
NC_012796:1049034:106572110657211066278558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase1e-0963.2
NC_016894:3580274:358909935890993589713615Acetobacterium woodii DSM 1030 chromosome, complete genomehypothetical protein1e-0963.2
NC_020409:1173796:118265711826571183256600Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeIntegrase family protein1e-0963.2
NC_020272:1311932:133478513347851335327543Bacillus amyloliquefaciens IT-45, complete genomesite-specific tyrosine recombinase2e-0962.8
NC_013891:1639694:165579916557991656341543Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomesite-specific recombinase, phage integrase family3e-0962.4
NC_014220:1858747:186560718656071866449843Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeintegrase family protein3e-0962.4
NC_013508:1491945:150146015014601501594135Edwardsiella tarda EIB202, complete genomehypothetical protein3e-0962.4
NC_012796:4075583:416552141655214166078558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase3e-0962.4
NC_016894:3988180:399539039953903996004615Acetobacterium woodii DSM 1030 chromosome, complete genomeprophage LambdaBa04 site-specific recombinase phage integrase family3e-0962
NC_014650:603500:628630628630629172543Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegrase6e-0961.2
NC_007907:960104:101699610169961017559564Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0860.5
NC_010674:950276:951654951654952292639Clostridium botulinum B str. Eklund 17B, complete genomesite-specific recombinase1e-0860.1
NC_008497:1111891:111574411157441116331588Lactobacillus brevis ATCC 367, complete genomeIntegrase2e-0859.3
NC_008261:1787345:180851718085171809065549Clostridium perfringens ATCC 13124, complete genomesite-specific recombinase, phage integrase family4e-0858.5
NC_020291:1122282:112310111231011123706606Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomephage integrase family protein4e-0858.5
NC_012796:77071:114358114358114915558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase4e-0858.5
NC_009012:2706755:272158027215802722146567Clostridium thermocellum ATCC 27405, complete genomephage integrase7e-0857.8
NC_009617:1085000:108757010875701088175606Clostridium beijerinckii NCIMB 8052 chromosome, complete genomephage integrase family protein1e-0757
NC_015875:34270:484594845949001543Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeprophage LambdaSa2, site-specific recombinase phage integrase family protein1e-0756.6
NC_021184:3533500:354809635480963548656561Desulfotomaculum gibsoniae DSM 7213, complete genomesite-specific recombinase XerD1e-0756.6
NC_009253:829913:844973844973845854882Desulfotomaculum reducens MI-1 chromosome, complete genomephage integrase family protein2e-0756.2
NC_009697:3110772:312844431284443128989546Clostridium botulinum A str. ATCC 19397 chromosome, completephage integrase family site specific recombinase2e-0755.8
NC_010516:2676746:269860026986002699145546Clostridium botulinum B1 str. Okra, complete genomesite-specific recombinase, phage integrase family3e-0755.5
NC_014376:3009403:3032351303235130335741224Clostridium saccharolyticum WM1 chromosome, complete genomeintegrase family protein4e-0755.5
NC_014011:1139818:115296411529641153572609Aminobacterium colombiense DSM 12261 chromosome, complete genomeintegrase family protein4e-0755.1
NC_012796:1049034:113043711304371130994558Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase5e-0754.7
NC_012658:1405788:141169614116961412241546Clostridium botulinum Ba4 str. 657 chromosome, complete genomephage integrase family site-specific recombinase5e-0754.7
NC_014721:2135500:215045321504532151325873Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeintegrase family protein9e-0753.9
NC_020908:4263552:426684742668474267752906Octadecabacter arcticus 238, complete genomeintegrase/recombinase1e-0653.5
NC_020908:2466446:247991324799132480827915Octadecabacter arcticus 238, complete genomeintegrase/recombinase1e-0653.5
NC_020134:1941523:195526219552621955822561Clostridium stercorarium subsp. stercorarium DSM 8532, completeintegrase family protein1e-0653.5
NC_020302:85821:1265931265931278041212Corynebacterium halotolerans YIM 70093 = DSM 44683, completeintegrase/recombinase2e-0652.8
NC_020302:2219378:2242156224215622433671212Corynebacterium halotolerans YIM 70093 = DSM 44683, completeintegrase/recombinase2e-0652.8
NC_009712:669647:689909689909690829921Candidatus Methanoregula boonei 6A8, complete genomephage integrase family protein2e-0652.8
NC_009699:3429817:345181334518133452358546Clostridium botulinum F str. Langeland chromosome, complete genomephage integrase family site specific recombinase2e-0652.8
NC_017297:3428429:345042734504273450972546Clostridium botulinum F str. 230613 chromosome, complete genomesite-specific recombinase, phage integrase family2e-0652.8
NC_015634:2595500:262310826231082623683576Bacillus coagulans 2-6 chromosome, complete genomeDNA integration/recombination/inversion protein3e-0652.4
NC_008536:435221:442656442656443567912Solibacter usitatus Ellin6076, complete genomephage integrase family protein3e-0652
NC_021184:4456904:446146844614684462346879Desulfotomaculum gibsoniae DSM 7213, complete genomesite-specific recombinase XerD4e-0651.6
NC_020181:4800298:480979548097954810412618Enterobacter aerogenes EA1509E, complete genomephage integrase family protein7e-0651.2
NC_016048:2907702:299919229991922999914723Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase7e-0651.2
NC_014623:3199248:321248432124843213164681Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesite-specific recombinase, phage integrase family6e-0651.2
NC_013887:1104840:111127211112721111829558Methanocaldococcus sp. FS406-22 chromosome, complete genomeintegrase family protein5e-0651.2
NC_016048:308342:325057325057325737681Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase5e-0651.2
NC_010814:294394:311852311852312805954Geobacter lovleyi SZ, complete genometyrosine recombinase XerC8e-0650.8
NC_006512:696000:703511703511704071561Idiomarina loihiensis L2TR, complete genomeIntegrase/recombinase, XerC/XerD family9e-0650.8
NC_016791:1341858:134375713437571344395639Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase XerD1e-0550.4