Pre_GI Gene

Some Help

Host: NC_008043 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008043:86470 Silicibacter sp. TM1040 mega plasmid, complete sequence

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
86470884852016Oligopeptidedipeptide ABC transporter ATP-binding protein-likeQuickGO ontologyBLASTP
88482896691188peptidase M20QuickGO ontologyBLASTP
89666909611296Putative enzyme of poly-gamma-glutamate biosynthesis capsule formation-likeQuickGO ontologyBLASTP
9133991971633phage integraseQuickGO ontologyBLASTP
9214192704564hypothetical protein
9311293603492hypothetical protein
9398794586600hypothetical protein
95143962611119hypothetical proteinBLASTP
9640697101696hypothetical protein
98105993551251hypothetical proteinBLASTP
99835100098264hypothetical protein
100360101157798Integrase catalytic regionQuickGO ontologyBLASTP
101190101456267transposase IS3IS911QuickGO ontologyBLASTP
10171910179577tRNA-ArgQuickGO ontologyBLASTP
1019201029451026transcriptional regulator LacI familyQuickGO ontologyBLASTP
1030161045211506TRAP C4-dicarboxylate transport system permease DctM subunitQuickGO ontologyBLASTP
104518105138621hypothetical proteinBLASTP
1051911062371047TRAP dicarboxylate transporter- DctP subunitQuickGO ontologyBLASTP
1064471084802034diguanylate cyclasephosphodiesteraseQuickGO ontologyBLASTP