Pre_GI Gene

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Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:696000 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6961036980851983Type I restriction-modification system methyltransferase subunitQuickGO ontologyBLASTP
6980826994281347Restriction endonuclease S subunitQuickGO ontologyBLASTP
6994217025973177Type I site-specific restriction-modification system R subunit helicaseQuickGO ontologyBLASTP
702600703499900Predicted membrane proteinQuickGO ontology
703511704071561Integraserecombinase XerCXerD familyQuickGO ontologyBLASTP
7043207054321113hypothetical proteinBLASTP
7054997067161218hypothetical proteinBLASTP
706889707068180hypothetical protein
707089707601513Acetyltransferase GNAT familyQuickGO ontologyBLASTP
7076357089451311IntegraseQuickGO ontologyBLASTP
70911070919384tRNA-LeuQuickGO ontology
70922270929271tRNA-CysQuickGO ontology
70930270937473tRNA-GlyQuickGO ontology
709471710019549Phosphatidylglycerophosphate synthaseQuickGO ontologyBLASTP
7100437118811839excinuclease ABC subunit CQuickGO ontologyBLASTP
711878712528651Response regulator LuxR family CheY HTH domainsQuickGO ontologyBLASTP
7127377133305943-methyladenine DNA glycosylaseQuickGO ontologyBLASTP
713338714132795TesB-like acyl-CoA thioesteraseQuickGO ontologyBLASTP
714162715070909Uncharacterized conserved membrane protein containing N-terminal Zn-ribbon domainQuickGO ontologyBLASTP
715527716195669Integral membrane proteinQuickGO ontologyBLASTP
716262716606345hypothetical proteinBLASTP
716606716929324hypothetical protein
716926717195270hypothetical protein