Pre_GI: BLASTP Hits

Some Help

Query: NC_009092:3057319:3075526 Shewanella loihica PV-4, complete genome

Start: 3075526, End: 3076419, Length: 894

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017059:469108:490260490260491210951Rhodospirillum photometricum DSM 122, complete genomeInner-membrane translocator2e-96352
NC_005296:4574213:457421345742134575151939Rhodopseudomonas palustris CGA009, complete genomepossible ABC transporter, permease protein2e-87322
NC_011768:79297:983709837099257888Desulfatibacillum alkenivorans AK-01, complete genomeinner-membrane translocator7e-35147
NC_008786:3045770:306849930684993069413915Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator2e-25116
NC_010999:252605:267378267378268256879Lactobacillus casei, complete genomeBranched-chain amino acid ABC transporter, permease protein1e-23110
NC_014334:267409:284947284947285825879Lactobacillus casei str. Zhang chromosome, complete genomebranched-chain amino acid ABC transporter permease1e-23110
NC_008526:250000:268106268106268984879Lactobacillus casei ATCC 334, complete genomeBranched-chain amino acid ABC-type transport system, permease component1e-23110
NC_009617:3184924:321745232174523218336885Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeinner-membrane translocator9e-24110
NC_014831:786011:792243792243793121879Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter membrane protein 1, HAAT family2e-23109
NC_010552:2089140:209189420918942092820927Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceinner-membrane translocator8e-22104
NC_007511:719493:732428732428733387960Burkholderia sp. 383 chromosome 2, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit7e-22104
NC_011001:2517159:251921225192122520171960Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amino acid ABC transporter permease2e-21103
NC_020291:6426704:644397764439776444852876Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeamino acid/amide ABC transporter membrane protein 1, HAAT family3e-21102
NC_008061:428501:442132442132443091960Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceinner-membrane translocator6e-21101
NC_008543:2035292:203657520365752037534960Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceinner-membrane translocator6e-21101
NC_013199:282901:298351298351299229879Lactobacillus rhamnosus Lc 705, complete genomehigh affinity branched-chain amino acid ABC transporter, permease component6e-21101
NC_013198:298000:316318316318317196879Lactobacillus rhamnosus GG, complete genomehigh affinity branched-chain amino acid ABC transporter, permease protein6e-21101
NC_010515:2358134:237333523733352374261927Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceinner-membrane translocator7e-21101
NC_011297:787932:792900792900793781882Dictyoglomus thermophilum H-6-12, complete genomebranched-chain amino acid ABC transporter permease protein2e-2099.8
NC_013740:15401:186611866119557897Acidaminococcus fermentans DSM 20731, complete genomeinner-membrane translocator3e-2099.4
NC_012791:2233098:224756422475642248493930Variovorax paradoxus S110 chromosome 1, complete genomeinner-membrane translocator3e-2099
NC_003454:2080705:209941620994162100342927Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBranched-chain amino acid transport system permease protein livH5e-2098.6
NC_015275:566000:567909567909568808900Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit6e-2098.2
NC_013595:5221330:523591652359165236794879Streptosporangium roseum DSM 43021, complete genomeinner-membrane translocator1e-1997.1
NC_008786:3323167:3347693334769333487091017Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator3e-1995.9
NC_009633:2137999:215979221597922160670879Alkaliphilus metalliredigens QYMF chromosome, complete genomeinner-membrane translocator3e-1892.4
NC_011661:961129:963759963759964640882Dictyoglomus turgidum DSM 6724, complete genomeinner-membrane translocator4e-1892.4
NC_014931:6203872:620403262040326204961930Variovorax paradoxus EPS chromosome, complete genomeinner-membrane translocator4e-1892
NC_015422:3836911:383954038395403840469930Alicycliphilus denitrificans K601 chromosome, complete genomeABC transporter integral membrane subunit6e-1891.7
NC_009255:1105786:114440311444031145356954Burkholderia vietnamiensis G4 chromosome 2, complete sequenceinner-membrane translocator8e-1891.3
NC_010086:1816378:187833118783311879284954Burkholderia multivorans ATCC 17616 chromosome 2, completeinner-membrane translocator8e-1891.3
NC_010805:575709:596023596023596973951Burkholderia multivorans ATCC 17616 chromosome 2, completebranched-chain amino acid transport system permease protein8e-1891.3
NC_008785:914411:936609936609937559951Burkholderia mallei SAVP1 chromosome II, complete sequenceABC transporter, hydrophobic amino acid uptake transporter (HAAT) family, permease protein1e-1790.5
NC_018750:6869675:686967568696756870565891Streptomyces venezuelae ATCC 10712, complete genomeHigh-affinity branched-chain amino acid transport system permease protein LivH2e-1789.7
NC_007503:2010858:201588620158862016770885Carboxydothermus hydrogenoformans Z-2901, complete genomehigh affinity branched-chain amino acid ABC transporter, permease protein3e-1789.4
NC_010725:3992948:401439040143904015265876Methylobacterium populi BJ001, complete genomeinner-membrane translocator5e-1788.6
NC_014837:1144500:116888711688871169750864Pantoea sp. At-9b chromosome, complete genomeinner-membrane translocator4e-1788.6
NC_007645:1245927:126485312648531265779927Hahella chejuensis KCTC 2396, complete genomeBranched-chain amino acid ABC-type transport system, permease components8e-1787.8
NC_010676:2658495:267762626776262678576951Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator2e-1686.7
NC_014614:2295131:231215123121512313029879Clostridium sticklandii, complete genomeleucine/isoleucine/valine transporter subunit ; membrane component of ABC superfamily2e-1686.7
NC_002937:614000:618218618218619126909Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehigh-affinity branched-chain amino acid ABC transporter, permease protein8e-1684.7
NC_008751:2774000:279395427939542794862909Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeinner-membrane translocator8e-1684.7
NC_015953:1581542:159406815940681594997930Streptomyces sp. SirexAA-E chromosome, complete genomeinner-membrane translocator3e-1582.8
NC_010557:679656:691986691986692936951Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceinner-membrane translocator3e-1582.8
NC_012988:4075429:409700140970014097876876Methylobacterium extorquens DM4, complete genomebranched-chain amino acid ABC transporter permease5e-1582
NC_015318:981989:997915997915998787873Hippea maritima DSM 10411 chromosome, complete genomeABC transporter integral membrane subunit4e-1582
NC_005773:694990:699022699022699936915Pseudomonas syringae pv. phaseolicola 1448A, complete genomehigh-affinity branched-chain amino acid ABC transporter, permease protein BraD7e-1581.3
NC_015499:119200:144015144015144923909Thermodesulfobium narugense DSM 14796 chromosome, complete genomeABC-type transporter, integral membrane subunit2e-1480.1
NC_012658:545840:548045548045548917873Clostridium botulinum Ba4 str. 657 chromosome, complete genomehigh-affinity branched-chain amino acid ABC transporter permease2e-1480.1
NC_010172:3712000:373107537310753731950876Methylobacterium extorquens PA1, complete genomeinner-membrane translocator2e-1480.1
NC_014844:2638994:265764826576482658550903Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeinner-membrane translocator2e-1480.1
NC_009718:579291:583821583821584699879Fervidobacterium nodosum Rt17-B1, complete genomeinner-membrane translocator3e-1479.3
NC_016582:9422650:944253094425309443462933Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative branched-chain amino acid ABC transporter permease3e-1479
NC_015224:279037:282706282706283632927Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,branched-chain amino acid transporter permease subunit LivH8e-1477.8
NC_003155:7453994:747563974756397476571933Streptomyces avermitilis MA-4680, complete genomebranched-chain amino acid ABC transporter permease protein2e-1376.6
NC_010572:6463939:648820664882066489135930Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative branched-chain amino acid ABC transporter permease protein3e-1376.3
NC_012108:3824977:383016438301643831096933Desulfobacterium autotrophicum HRM2, complete genomeABC-type branched-chain amino acid transport system, permease component3e-1376.3
NC_011742:3799788:380425438042543805180927Escherichia coli S88 chromosome, complete genomebranched-chain amino acid transporter permease subunit LivH4e-1375.5
NC_008563:3888232:388950638895063890432927Escherichia coli APEC O1, complete genomehigh-affinity branched-chain amino acid transport system permease protein LivH4e-1375.5
NC_007946:3855445:385671938567193857645927Escherichia coli UTI89, complete genomehigh-affinity branched-chain amino acid transport system permease protein livH4e-1375.5
NC_008148:2053467:205727120572712058236966Rubrobacter xylanophilus DSM 9941, complete genomeinner-membrane translocator4e-1375.5
NC_016114:5539021:556218455621845563116933Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeinner-membrane translocator5e-1375.5
NC_008702:4064470:408740240874024088334933Azoarcus sp. BH72, complete genomeABC transporter permease protein6e-1375.1
NC_021066:1393750:141023314102331411147915Raoultella ornithinolytica B6, complete genomehigh-affinity branched-chain amino acid ABC transporter membrane protein6e-1375.1
NC_017192:1063955:106518710651871066059873Arcobacter sp. L, complete genomebranched-chain amino acid ABC transporter permease component7e-1374.7
NC_015556:819503:832389832389833303915Pseudomonas fulva 12-X chromosome, complete genomeinner-membrane translocator7e-1374.7
NC_012587:3613162:363674136367413637613873Rhizobium sp. NGR234, complete genomeputative branched-chain amino acid transport system / permease component8e-1374.7
NC_013522:698114:722229722229723113885Thermanaerovibrio acidaminovorans DSM 6589, complete genomeinner-membrane translocator1e-1274.3
NC_011060:459615:468022468022468906885Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator3e-1272.4
NC_009436:2685910:268828626882862689200915Enterobacter sp. 638, complete genomeinner-membrane translocator4e-1272.4
NC_013939:913890:929718929718930581864Deferribacter desulfuricans SSM1, complete genomebranched-chain amino acid ABC transporter permease6e-1271.6
NC_008786:5128363:513951351395135140397885Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator8e-1271.2
NC_008687:229941:236773236773237651879Paracoccus denitrificans PD1222 chromosome 2, complete sequenceinner-membrane translocator2e-1170.1
NC_010170:4739925:474503347450334745905873Bordetella petrii, complete genomeputative branched-chain amino acid transport permease2e-1170.1
NC_019897:2908971:2913408291340829151981791Thermobacillus composti KWC4 chromosome, complete genomebranched-chain amino acid ABC transporter permease2e-1170.1
NC_015681:1201926:121237712123771213279903Thermodesulfatator indicus DSM 15286 chromosome, complete genomeurea ABC transporter permease UrtB3e-1169.3
NC_014828:2497462:251340325134032514260858Ethanoligenens harbinense YUAN-3 chromosome, complete genomeinner-membrane translocator3e-1169.3
NC_012988:1817000:182309118230911823975885Methylobacterium extorquens DM4, complete genomeABC transporter4e-1168.9
NC_011757:1553500:155955015595501560434885Methylobacterium chloromethanicum CM4, complete genomeinner-membrane translocator4e-1168.9
NC_014153:1663597:167626816762681677137870Thiomonas intermedia K12 chromosome, complete genomeinner-membrane translocator1e-1067.8
NC_014830:3438504:347840034784003479263864Intrasporangium calvum DSM 43043 chromosome, complete genomeinner-membrane translocator9e-1167.8
NC_009434:3434381:345878434587843459671888Pseudomonas stutzeri A1501, complete genomebranched-chain amino acid ABC transporter, permease protein9e-1167.8
NC_015711:3085038:310865731086573109577921Myxococcus fulvus HW-1 chromosome, complete genomebranched-chain amino acid ABC transporter permease LivH1e-1067.4
NC_010170:1219641:122598412259841226847864Bordetella petrii, complete genomeputative branched-chain amino acid transport permease2e-1066.2
NC_013524:392089:405992405992406882891Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeinner-membrane translocator3e-1066.2
NC_015684:1343251:136214213621421362996855Oligotropha carboxidovorans OM5 chromosome, complete genomeABC transporter permease3e-1066.2
NC_013422:1732677:173793617379361738862927Halothiobacillus neapolitanus c2, complete genomeurea ABC transporter, permease protein UrtB1e-0963.9
NC_011060:2099255:210740221074022108286885Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator2e-0963.2
NC_016147:2820232:282737228273722828250879Pseudoxanthomonas spadix BD-a59 chromosome, complete genomebranched chain amino acid ABC transporter permease3e-0962.8
NC_016633:1898234:189823418982341899109876Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebranched-chain amino acid ABC-type transport system, permease component5e-0962
NC_008786:4216152:423528442352844236147864Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator7e-0961.6
NC_009376:1579332:157933215793321580291960Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeinner-membrane translocator7e-0961.2
NC_003911:1791878:1825767182576718277221956Silicibacter pomeroyi DSS-3, complete genomebranched-chain amino acid ABC transporter, permease protein1e-0860.5
NC_008343:2050000:206574320657432066669927Granulibacter bethesdensis CGDNIH1, complete genomeamide-urea transport system permease protein1e-0860.5
NC_010676:2720068:272545727254572726353897Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator3e-0859.3
NC_016645:1059482:107151310715131072472960Pyrobaculum sp. 1860 chromosome, complete genomeinner-membrane translocator4e-0858.9
NC_007948:360199:370059370059370943885Polaromonas sp. JS666, complete genomeinner-membrane translocator5e-0858.5
NC_007953:572926:581940581940582812873Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit8e-0858.2
NC_009437:2579161:262073926207392621650912Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeinner-membrane translocator7e-0858.2
NC_011894:4013830:403595340359534036819867Methylobacterium nodulans ORS 2060, complete genomeinner-membrane translocator6e-0858.2
NC_010511:4258000:427896942789694279835867Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator8e-0857.8
NC_007953:504939:514928514928515788861Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit9e-0857.8
NC_010511:6169468:618951461895146190383870Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator9e-0857.8
NC_021177:1736854:174736717473671748296930Streptomyces fulvissimus DSM 40593, complete genomeBranched chain amino acid transport permease1e-0757.4
NC_004369:1051013:106199710619971062881885Corynebacterium efficiens YS-314, complete genomeputative ABC transporter permease protein1e-0757.4
NC_008699:1247423:125257812525781253498921Nocardioides sp. JS614, complete genomeinner-membrane translocator2e-0757
NC_018000:1914945:193912419391241940038915Sinorhizobium fredii USDA 257 chromosome, complete genomehigh-affinity branched-chain amino acid transport system permease LivH2e-0757
NC_017506:2993679:3015708301570830173061599Marinobacter adhaerens HP15 chromosome, complete genomeurea ABC transporter permease UrtB1e-0757
NC_013895:1282566:129451112945111295386876Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeputative high-affinity branched-chain amino acid ABC transporter, permease protein LivH2e-0756.6
NC_010003:528855:549214549214550095882Petrotoga mobilis SJ95, complete genomeinner-membrane translocator4e-0755.5
NC_018691:761560:7750947750947766111518Alcanivorax dieselolei B5 chromosome, complete genomeBranched-chain amino acid ABC transporter, permease protein4e-0755.5
NC_007952:1453000:147894514789451479862918Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit5e-0755.5
NC_010505:4676403:470123147012314702064834Methylobacterium radiotolerans JCM 2831, complete genomeinner-membrane translocator6e-0755.1
NC_011060:1898224:193192919319291932798870Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator5e-0755.1
NC_013156:431795:462923462923463837915Methanocaldococcus fervens AG86, complete genomeinner-membrane translocator7e-0754.7
NC_015948:2421933:242105324210532421940888Haloarcula hispanica ATCC 33960 chromosome chromosome I, completebranched-chain amino acid ABC transporter permease8e-0754.7
NC_010511:637214:652764652764653654891Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator1e-0654.3
NC_011004:4073916:4113713411371341147201008Rhodopseudomonas palustris TIE-1, complete genomeinner-membrane translocator1e-0654.3
NC_014098:3133440:313608931360893136991903Bacillus tusciae DSM 2912 chromosome, complete genomeinner-membrane translocator1e-0654.3
NC_015318:1583839:159048715904871591350864Hippea maritima DSM 10411 chromosome, complete genomeABC transporter integral membrane subunit9e-0754.3
NC_014831:2133060:214088321408832141749867Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter membrane protein 1, HAAT family9e-0754.3
NC_014974:1076565:109330510933051094168864Thermus scotoductus SA-01 chromosome, complete genomeinner-membrane translocator1e-0653.9
NC_020908:5047410:505246350524635053332870Octadecabacter arcticus 238, complete genomeputative high-affinity branched-chain amino acid transport system permease protein2e-0653.5
NC_008701:1363665:138884613888461389721876Pyrobaculum islandicum DSM 4184, complete genomeinner-membrane translocator2e-0653.5
NC_019964:2080444:2099693209969321007931101Halovivax ruber XH-70, complete genomebranched-chain amino acid ABC-type transport system, permease component3e-0653.1
NC_015387:2072237:207223720722372073103867Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeABC-type transporter, integral membrane subunit2e-0653.1
NC_018581:3202281:3202281320228132035341254Gordonia sp. KTR9 chromosome, complete genomeBranched-chain amino acid ABC-type transport system, permease component3e-0652.8
NC_008212:2978786:299322129932212994147927Haloquadratum walsbyi DSM 16790, complete genomeABC-type urea transport system, permease protein I3e-0652.8
NC_013209:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-01, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017100:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-03, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017108:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-12, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017111:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-32, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017121:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-07, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017125:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-22, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017146:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-26, complete genomeamide-urea transporter permease protein4e-0652.4
NC_017150:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-01-42C, complete genomeamide-urea transporter permease protein4e-0652.4
NC_009921:3666898:3707966370796637107972832Frankia sp. EAN1pec, complete genomeABC transporter related6e-0652
NC_020210:2044944:205128420512842052150867Geobacillus sp. GHH01, complete genomeputative leucine ABC transporter ATP-binding protein7e-0651.6
NC_013592:3263005:328150732815073282400894Dickeya dadantii Ech586, complete genomeinner-membrane translocator7e-0651.6
NC_016585:1004000:102056910205691021501933Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencebranched-chain amino acid ABC transporter permease9e-0651.2
NC_014532:110875:1343101343101353171008Halomonas elongata DSM 2581, complete genomeABC-type transport system permease protein1e-0551.2