Pre_GI: BLASTP Hits

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Query: NC_009092:2902171:2918374 Shewanella loihica PV-4, complete genome

Start: 2918374, End: 2919585, Length: 1212

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009831:3092126:3104548310454831057561209Shewanella sediminis HAW-EB3, complete genomeporin, gram-negative type0644
NC_011663:3181579:3196540319654031977511212Shewanella baltica OS223 chromosome, complete genomeporin5e-168590
NC_009052:1899954:1904800190480019060111212Shewanella baltica OS155, complete genomeporin, Gram-negative type1e-167589
NC_008321:2922000:2934350293435029355581209Shewanella sp. MR-4, complete genomeporin, Gram-negative type7e-159560
NC_008322:2983951:2995033299503329962411209Shewanella sp. MR-7, complete genomeporin, Gram-negative type2e-158558
NC_008577:3125675:3134873313487331360811209Shewanella sp. ANA-3 chromosome 1, complete sequenceporin, Gram-negative type3e-157555
NC_014012:3356629:3365417336541733666221206Shewanella violacea DSS12, complete genomeouter membrane porin, putative8e-146516
NC_009092:2644164:2667624266762426687811158Shewanella loihica PV-4, complete genomeporin, Gram-negative type6e-58224
NC_014541:1280835:1286786128678612879401155Ferrimonas balearica DSM 9799 chromosome, complete genomeporin Gram-negative type6e-44178
NC_014541:1280835:1285627128562712866491023Ferrimonas balearica DSM 9799 chromosome, complete genomeporin Gram-negative type1e-33144
NC_016514:2476359:2480816248081624819251110Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane protein N2e-1170.9
NC_013716:1756545:1760425176042517615581134Citrobacter rodentium ICC168, complete genomeouter membrane protein N (porin)5e-1169.3
NC_016612:5208936:5214784521478452158541071Klebsiella oxytoca KCTC 1686 chromosome, complete genomeporin5e-1169.3
NC_008563:2041345:2041345204134520424901146Escherichia coli APEC O1, complete genomeOuter membrane protein N precursor7e-1168.6
NC_016902:1902431:1919201191920119203161116Escherichia coli KO11FL chromosome, complete genomeporin2e-1067.4
CP002185:2181936:2185539218553921866541116Escherichia coli W, complete genome2e-1067.4
CP002516:1902431:1919201191920119203161116Escherichia coli KO11, complete genomeporin Gram-negative type2e-1067.4
NC_020063:2449554:2453423245342324545921170Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)3e-1066.6
NC_020064:1409596:1409596140959614106931098Serratia marcescens FGI94, complete genomeouter membrane protein (porin)8e-1065.1
CU928160:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN2e-0963.9
NC_011741:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN2e-0963.9
NC_004431:2185750:2185750218575021868771128Escherichia coli CFT073, complete genomeOuter membrane protein N precursor2e-0963.5
NC_008253:1938975:1938975193897519400331059Escherichia coli 536, complete genomeputative outer membrane pore protein2e-0963.5
NC_013941:2425233:2428383242838324295701188Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-0963.2
NC_004431:1401681:1420007142000714211491143Escherichia coli CFT073, complete genomeOuter membrane porin protein nmpC precursor3e-0963.2
NC_008563:1175035:1193929119392911950711143Escherichia coli APEC O1, complete genomeouter membrane porin protein NmpC precursor3e-0963.2
NC_007946:1239278:1256542125654212576841143Escherichia coli UTI89, complete genomeouter membrane porin protein NmpC precursor3e-0963.2
NC_011742:1177946:1197451119745111985931143Escherichia coli S88 chromosome, complete genomeouter membrane porin3e-0963.2
NC_011751:643976:6614176614176624991083Escherichia coli UMN026 chromosome, complete genomeputative outer membrane porin3e-0963.2
NC_014121:1848971:1862509186250918636181110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane pore protein N, non-specific8e-0962
AP010958:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted outer membrane porin protein7e-0962
NC_009801:2159123:2163636216363621647091074Escherichia coli E24377A, complete genomeouter membrane protein homolog7e-0962
NC_013353:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009, complete genomeouter membrane porin protein7e-0962
NC_011283:1901229:1915691191569119168361146Klebsiella pneumoniae 342 chromosome, complete genomeporin2e-0860.5
NC_016612:4119410:4119410411941041205161107Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane pore protein N, non-specific4e-0859.7
NC_020064:2779864:2792369279236927934481080Serratia marcescens FGI94, complete genomeouter membrane protein (porin)7e-0858.9
NC_020260:3004500:3019080301908030201501071Cronobacter sakazakii Sp291, complete genomeouter membrane phosphoporin protein E2e-0757.4
NC_010498:1210145:1224155122415512253181164Escherichia coli SMS-3-5, complete genomeporin family protein2e-0757
NC_011415:2248417:2252020225202022531831164Escherichia coli SE11 chromosome, complete genomeputative porin2e-0757
NC_013364:2522888:2526040252604025272031164Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane pore protein2e-0757
NC_011740:1991941:1995018199501819960731056Escherichia fergusonii ATCC 35469, complete genomeOuter membrane protein N precursor (porin)3e-0756.6
NC_013716:2139952:2145537214553721467121176Citrobacter rodentium ICC168, complete genomeOuter membrane porin protein4e-0756.2
NC_021066:601029:6145096145096155791071Raoultella ornithinolytica B6, complete genomeouter membrane protein F7e-0755.5
NC_013941:699286:7138747138747149561083Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeouter membrane porin protein C7e-0755.5
NC_011740:1991941:1996644199664419977471104Escherichia fergusonii ATCC 35469, complete genomeouter membrane porin; DLP12 prophage9e-0755.1
CU928145:824367:8366178366178376991083Escherichia coli 55989 chromosome, complete genomeouter membrane porin; DLP12 prophage1e-0654.7
NC_011748:824367:8366178366178376991083Escherichia coli 55989, complete genomeouter membrane porin; DLP12 prophage1e-0654.7
NC_015566:3659318:3676851367685136779691119Serratia sp. AS12 chromosome, complete genomeporin2e-0654.3
NC_017328:1835108:1844591184459118456911101Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane porin protein4e-0653.1
NC_004741:1823000:1828994182899418300941101Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane porin protein4e-0653.1
NC_004337:1783645:1792048179204817931481101Shigella flexneri 2a str. 301, complete genomeputative outer membrane porin protein4e-0652.8
NC_015062:99969:109904109904110575672Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceporin Gram-negative type5e-0652.4