Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1804487 Shigella flexneri 5 str. 8401, complete genome

Start: 1804487, End: 1805590, Length: 1104

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:1783645:1805163180516318063591197Shigella flexneri 2a str. 301, complete genomeputative oxidoreductase0752
NC_017328:1835108:1857742185774218588721131Shigella flexneri 2002017 chromosome, complete genomeputative oxidoreductase0709
NC_012759:1409086:1409086140908614101471062Escherichia coli BW2952 chromosome, complete genomeputative oxidoreductase, Zn-dependent and NAD(P)-binding0702
NC_010473:1607646:1607646160764616086831038Escherichia coli str. K-12 substr. DH10B, complete genomepredicted oxidoreductase, Zn-dependent and NAD(P)-binding0701
NC_000913:1517051:1517051151705115180881038Escherichia coli K12, complete genomepredicted oxidoreductase, Zn-dependent and NAD(P)-binding0701
NC_013421:553193:5593395593395603761038Pectobacterium wasabiae WPP163, complete genomeAlcohol dehydrogenase zinc-binding domain protein5e-151533
NC_002947:2809591:2822425282242528234591035Pseudomonas putida KT2440, complete genomealcohol dehydrogenase, zinc-containing2e-145515
NC_015566:3269469:3273833327383332748671035Serratia sp. AS12 chromosome, complete genome2-alkenal reductase1e-141503
NC_013508:876431:8832918832918843221032Edwardsiella tarda EIB202, complete genomeputative NADP-dependent oxidoreductase4e-113408
NC_012779:916000:918589918589919563975Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-106386
NC_017033:1939507:1961821196182119628611041Frateuria aurantia DSM 6220 chromosome, complete genomeputative NADP-dependent oxidoreductase7e-99360
NC_009848:775000:7750667750667760701005Bacillus pumilus SAFR-032, complete genomeNADP-dependent dehydrogenase2e-88325
NC_009656:3733913:3753978375397837549821005Pseudomonas aeruginosa PA7 chromosome, complete genomeoxidoreductase2e-82306
NC_017986:1128879:1133051113305111340521002Pseudomonas putida ND6 chromosome, complete genomeAlcohol dehydrogenase, zinc-containing3e-81301
NC_009512:4375452:4376391437639143773921002Pseudomonas putida F1, complete genomeAlcohol dehydrogenase, zinc-binding domain protein1e-80300
NC_010551:2007926:201314120131412014139999Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceAlcohol dehydrogenase zinc-binding domain protein6e-78291
NC_015379:5002595:5021088502108850220921005Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative oxidoreductase9e-77287
NC_016830:4914406:4933024493302449340281005Pseudomonas fluorescens F113 chromosome, complete genomeoxidoreductase9e-77287
NC_014472:3530274:3539306353930635403131008Flavobacteriales bacterium HTCC2170 chromosome, complete genomeputative NADP-dependent oxidoreductase1e-72273
NC_013169:1759900:1774669177466917756791011Kytococcus sedentarius DSM 20547, complete genomepredicted NADP-dependent oxidoreductase4e-67255
NC_015856:2646816:2646816264681626480181203Collimonas fungivorans Ter331 chromosome, complete genomealcohol dehydrogenase, zinc-binding protein2e-62239
NC_013235:5127148:5131807513180751328291023Nakamurella multipartita DSM 44233, complete genomeAlcohol dehydrogenase zinc-binding domain protein3e-59229
NC_014006:1862000:187903318790331880025993Sphingobium japonicum UT26S chromosome 1, complete genomeputative 2-alkenal reductase4e-58225
NC_008268:7485710:7495277749527774962871011Rhodococcus sp. RHA1, complete genomepossible NADP-dependent oxidoreductase2e-57223
NC_016027:2580477:2582141258214125831811041Gluconacetobacter xylinus NBRC 3288, complete genomeNADP-dependent oxidoreductase L4BD family4e-55215
NC_014722:1497244:151062815106281511338711Burkholderia rhizoxinica HKI 454, complete genomeNADP-DEPENDENT OXIDOREDUCTASE9e-45181
NC_007511:1780500:1783268178326817843111044Burkholderia sp. 383 chromosome 2, complete sequenceZinc-containing alcohol dehydrogenase superfamily3e-24113
NC_011420:2803196:282094828209482821922975Rhodospirillum centenum SW, complete genomeoxidoreductase, zinc-binding dehydrogenase family5e-1789
NC_012982:1569426:1578683157868315796901008Hirschia baltica ATCC 49814, complete genomeAlcohol dehydrogenase zinc-binding domain protein3e-1479.7
NC_012522:7871173:787203878720387873021984Rhodococcus opacus B4, complete genomeputative oxidoreductase1e-1274.3
NC_014830:3438504:3467438346743834684691032Intrasporangium calvum DSM 43043 chromosome, complete genomeAlcohol dehydrogenase zinc-binding domain protein2e-1273.6
NC_011985:1831961:185061518506151851595981Agrobacterium radiobacter K84 chromosome 1, complete genomequinone oxidoreductase protein5e-1272.4
NC_019815:114288:128196128196129173978Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiNADPH2:quinone reductase2e-1170.5
NC_019673:3726519:3742376374237637433951020Saccharothrix espanaensis DSM 44229 complete genomeputative oxidoreductase7e-1065.5
NC_007511:1681764:168079416807941681786993Burkholderia sp. 383 chromosome 2, complete sequenceZinc-containing alcohol dehydrogenase superfamily1e-0964.3
NC_007908:1600244:1604359160435916053601002Rhodoferax ferrireducens T118, complete genomeAlcohol dehydrogenase, zinc-binding5e-0962.4
NC_020299:532000:553144553144554121978Candidatus Kinetoplastibacterium oncopeltii TCC290E, completeNADPH2:quinone reductase7e-0962
NC_019892:5368096:537094853709485371937990Singulisphaera acidiphila DSM 18658 chromosome, complete genomeZn-dependent oxidoreductase9e-0961.6
NC_019814:678404:693032693032694009978Candidatus Kinetoplastibacterium blastocrithidii (ex StrigomonasNADPH2:quinone reductase1e-0861.2
NC_017955:2494640:253401225340122534968957Modestobacter marinus, complete genomealcohol dehydrogenase1e-0861.2
NC_007005:321695:332888332888333874987Pseudomonas syringae pv. syringae B728a, complete genomeZinc-containing alcohol dehydrogenase superfamily1e-0861.2
NC_011992:889985:8941338941338951371005Acidovorax ebreus TPSY, complete genomeNAD(P)H quinone oxidoreductase, PIG3 family1e-0860.8
NC_013406:3672857:3706096370609637070971002Paenibacillus sp. Y412MC10 chromosome, complete genomealcohol dehydrogenase zinc-binding domain-containing protein2e-0860.8
NC_011146:603429:614908614908615861954Geobacter bemidjiensis Bem, complete genomeAlcohol dehydrogenase GroES domain protein2e-0860.5
NC_010571:1459363:146305914630591464036978Opitutus terrae PB90-1, complete genomeAlcohol dehydrogenase zinc-binding domain protein3e-0859.7
NC_018868:4010615:401061540106154011592978Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomezinc-containing alcohol dehydrogenase3e-0859.7
NC_016935:1868839:1882400188240018834011002Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative oxidoreductase7e-0858.5
NC_014923:5940500:5958876595887659599821107Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAlcohol dehydrogenase zinc-binding domain protein1e-0758.2
NC_015675:6493444:6513547651354765146531107Mesorhizobium opportunistum WSM2075 chromosome, complete genomealcohol dehydrogenase zinc-binding domain-containing protein1e-0758.2
NC_019973:5869500:5887836588783658889421107Mesorhizobium australicum WSM2073, complete genomeZn-dependent oxidoreductase, NADPH:quinone reductase1e-0758.2
NC_010623:1961685:199093119909311991926996Burkholderia phymatum STM815 chromosome 2, complete sequenceAlcohol dehydrogenase zinc-binding domain protein2e-0757.4
NC_016935:2567039:263105026310502632024975Paenibacillus mucilaginosus 3016 chromosome, complete genomezinc-binding dehydrogenase family oxidoreductase2e-0757.4
NC_016113:994469:996584996584997513930Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceZn-dependent oxidoreductase2e-0757.4
NC_015690:1348691:1362141136214113631421002Paenibacillus mucilaginosus KNP414 chromosome, complete genomeputative oxidoreductase2e-0757
NC_011831:2213306:223423822342382235206969Chloroflexus aggregans DSM 9485, complete genomeAlcohol dehydrogenase zinc-binding domain protein2e-0757
NC_010170:1661915:167901616790161679993978Bordetella petrii, complete genomeput. NADPH quinone oxidoreductase, zinc binding2e-0756.6
NC_011145:3750021:378486837848683785794927Anaeromyxobacter sp. K, complete genomeAlcohol dehydrogenase zinc-binding domain protein3e-0756.2
NC_007622:1397407:141856514185651419536972Staphylococcus aureus RF122, complete genomeprobable alcohol dehydrogenase3e-0756.2
NC_010612:103081:1228761228761294696594Mycobacterium marinum M, complete genomepolyketide synthase PKS3e-0756.2
NC_013595:606096:616999616999617985987Streptosporangium roseum DSM 43021, complete genomealcohol dehydrogenase4e-0756.2
NC_009380:725870:745827745827746810984Salinispora tropica CNB-440 chromosome, complete genomealcohol dehydrogenase4e-0755.8
NC_007347:1596040:159868815986881599659972Ralstonia eutropha JMP134 chromosome 1, complete sequenceZinc-containing alcohol dehydrogenase superfamily7e-0755.1
NC_014472:3530274:353832535383253539302978Flavobacteriales bacterium HTCC2170 chromosome, complete genomeprobable oxidoreductase protein7e-0755.1
NC_016024:1876000:1885491188549118865071017Candidatus Chloracidobacterium thermophilum B chromosome chromosomeNADPH:quinone reductase-like Zn-dependent oxidoreductase1e-0654.7
NC_008390:2018201:202279620227962022987192Burkholderia cepacia AMMD chromosome 1, complete sequenceoxidoreductase, zinc-binding dehydrogenase family protein1e-0654.3
NC_015690:2039215:208150620815062082480975Paenibacillus mucilaginosus KNP414 chromosome, complete genomezinc-binding dehydrogenase family oxidoreductase1e-0654.3
NC_008781:1507384:151011615101161511102987Polaromonas naphthalenivorans CJ2, complete genomeAlcohol dehydrogenase, zinc-binding domain protein2e-0653.9
NC_019950:3306419:3312426331242633187706345Mycobacterium canettii CIPT 140060008 complete genomePutative polyketide synthase Pks13e-0653.1
NC_007492:3801237:381308138130813814076996Pseudomonas fluorescens PfO-1, complete genomeZinc-containing alcohol dehydrogenase superfamily3e-0653.1
NC_016047:637778:6548156548156558281014Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeoxidoreductase zinc-binding protein3e-0653.1
NC_016582:5393568:541186054118605412789930Streptomyces bingchenggensis BCW-1 chromosome, complete genomealcohol dehydrogenase GroES domain-containing protein3e-0653.1
NC_010159:2955562:2976631297663129776411011Yersinia pestis Angola, complete genomeputative NAD(P)H quinone oxidoreductase, PIG3 family4e-0652.8
NC_009381:2009842:2030314203031420313241011Yersinia pestis Pestoides F chromosome, complete genomeZinc-binding dehydrogenase4e-0652.8
NC_014029:2607666:2628511262851126295211011Yersinia pestis Z176003 chromosome, complete genomeZinc-binding dehydrogenase4e-0652.8
NC_017265:1715035:1715035171503517160451011Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative Zinc-binding dehydrogenase4e-0652.8
NC_002945:3246278:3248190324819032545286339Mycobacterium bovis AF2122/97, complete genomepolyketide synthase PKS14e-0652.8
NC_012207:3237440:3238490323849032448286339Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative polyketide synthase4e-0652.8
NC_008769:3242453:3245663324566332520016339Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative polyketide synthase pks14e-0652.8
NC_016804:3221818:3225028322502832313666339Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative polyketide synthase14e-0652.8
NC_015848:3343731:3348117334811733529674851Mycobacterium canettii CIPT 140010059, complete genomeputative polyketide synthase PKS14e-0652.8
NC_002570:388000:393706393706394680975Bacillus halodurans C-125, complete genomequinone oxidoreductase4e-0652.8
NC_007492:2629350:265043026504302651419990Pseudomonas fluorescens PfO-1, complete genomeZinc-containing alcohol dehydrogenase superfamily4e-0652.8
NC_016582:6448430:645429964542996455267969Streptomyces bingchenggensis BCW-1 chromosome, complete genomeoxidoreductase6e-0652.4
NC_009565:3299937:3302976330297633078264851Mycobacterium tuberculosis F11, complete genomepolyketide synthase pks15e-0652.4
NC_000962:3288464:3291503329150332963534851Mycobacterium tuberculosis H37Rv, complete genomePROBABLE POLYKETIDE SYNTHASE PKS15e-0652.4
NC_009525:3300456:3303495330349533083454851Mycobacterium tuberculosis H37Ra, complete genomeputative polyketide synthase Pks15e-0652.4
NC_002755:3282785:3285824328582432906864863Mycobacterium tuberculosis CDC1551, complete genomepolyketide synthase5e-0652.4
NC_016612:5231065:527327052732705274250981Klebsiella oxytoca KCTC 1686 chromosome, complete genomeNAD(P)H quinone oxidoreductase, PIG3 family protein9e-0651.6