Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:4375452 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
43754524376213762short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
437639143773921002Alcohol dehydrogenase zinc-binding domain proteinQuickGO ontologyBLASTP
43777634378464702orotidine 5-phosphate decarboxylaseQuickGO ontologyBLASTP
43786484378815168hypothetical proteinBLASTP
43789084379243336competence protein ComEA helix-hairpin-helix repeat proteinQuickGO ontologyBLASTP
43800474380322276hypothetical proteinBLASTP
43805214381351831hypothetical proteinBLASTP
43816474382237591transferase hexapeptide repeat containing proteinQuickGO ontologyBLASTP
43832054383891687ABC-2 type transporterQuickGO ontologyBLASTP
43839054384558654ABC transporter relatedQuickGO ontologyBLASTP
438461343857191107lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
438573943868031065polysaccharide export proteinQuickGO ontologyBLASTP
438692043894242505Capsule polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
438982643908361011UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
439088643917288432-dehydro-3-deoxyphosphooctonate aldolaseQuickGO ontologyBLASTP
4391758439304412873-deoxy-D-manno-octulosonate cytidylyltransferaseQuickGO ontologyBLASTP
43930904394022933KpsFGutQ family proteinQuickGO ontologyBLASTP
439466443957221059hypothetical protein
439602443980452022Capsule polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
439798543993041320Capsule polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
43993014400077777short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
440008544016321548sulfataseQuickGO ontologyBLASTP
44016374402203567GCN5-related N-acetyltransferaseQuickGO ontology
440220344043472145Capsule polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
440435144053941044Phytanoyl-CoA dioxygenaseQuickGO ontologyBLASTP