Pre_GI: BLASTP Hits

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Query: NC_008043:167108:179563 Silicibacter sp. TM1040 mega plasmid, complete sequence

Start: 179563, End: 180438, Length: 876

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008740:3520500:353388335338833534722840Marinobacter aquaeolei VT8, complete genometranscriptional regulator, LysR family6e-23108
NC_014923:1249267:125214612521461253042897Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeLysR substrate-binding protein2e-22106
NC_012660:5242392:526715152671515268029879Pseudomonas fluorescens SBW25 chromosome, complete genomeputative LysR family transcriptional regulator4e-22105
NC_009512:2108686:213137721313772132363987Pseudomonas putida F1, complete genometranscriptional regulator, LysR family2e-2099.8
NC_008314:1465643:148490714849071485779873Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, LysR-family1e-1790.5
NC_015376:3320818:334604133460413346937897Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator, LysR family protein2e-1790.1
NC_011000:2732330:275714127571412757803663Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein1e-1687.4
NC_013854:2714033:272876027287602729704945Azospirillum sp. B510, complete genometranscriptional regulator1e-1687.4
NC_008209:2367500:238556023855602386456897Roseobacter denitrificans OCh 114, complete genometranscriptional regulator, LysR family, putative5e-1685.1
NC_008391:271254:292778292778293659882Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, LysR family6e-1684.7
NC_014006:3124818:314139031413903142250861Sphingobium japonicum UT26S chromosome 1, complete genomeLysR-family transcriptional regulator4e-1582
NC_010505:5077162:508171750817175082577861Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, LysR family5e-1581.6
NC_016514:1183356:118534511853451186274930Enterobacter cloacae EcWSU1 chromosome, complete genomemau operon transcriptional activator9e-1580.9
NC_020064:3998715:400839140083914009290900Serratia marcescens FGI94, complete genometranscriptional regulator1e-1480.5
NC_013440:6045708:605520060552006056150951Haliangium ochraceum DSM 14365, complete genometranscriptional regulator, LysR family2e-1480.1
NC_010511:4313769:434019643401964341101906Methylobacterium sp. 4-46 chromosome, complete genomeLysR family transcriptional regulator4e-1479
NC_009485:1222697:122572012257201226622903Bradyrhizobium sp. BTAi1 chromosome, complete genomeLysR family transcriptional regulator9e-1477.8
NC_009439:3485000:349808734980873498971885Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator2e-1376.6
NC_011283:1901229:190437519043751905256882Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator2e-1273.2
NC_020911:83717:915289152892433906Octadecabacter antarcticus 307, complete genomeLysR family transcriptional regulator3e-1272.4
NC_003047:3202125:321489732148973215844948Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN7e-1271.6
NC_020064:1409596:143049414304941431363870Serratia marcescens FGI94, complete genometranscriptional regulator6e-1271.6
NC_003902:4430621:443306444330644433990927Xanthomonas campestris pv. campestris str. ATCC 33913, completeLysR family transcriptional regulator8e-1271.2
NC_007086:4489153:449064744906474491573927Xanthomonas campestris pv. campestris str. 8004, complete genometranscriptional regulator lysR family8e-1271.2
NC_009436:2056000:205954820595482060441894Enterobacter sp. 638, complete genomeLysR family transcriptional regulator2e-1170.1
NC_006569:370846:386564386564387508945Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencetranscriptional regulator, LysR family2e-1169.7
NC_010162:11766000:117806901178069011781637948Sorangium cellulosum 'So ce 56', complete genomeLysR family transcriptional regulator3e-1169.3
NC_015566:4350080:435592243559224356833912Serratia sp. AS12 chromosome, complete genomeLysR family transcriptional regulator1e-1067.4
NC_015566:69190:932949329494157864Serratia sp. AS12 chromosome, complete genomeLysR family transcriptional regulator1e-1067
NC_020911:1859210:187856918785691879453885Octadecabacter antarcticus 307, complete genomeLysR family transcriptional regulator1e-1067
NC_015567:69190:932949329494157864Serratia sp. AS9 chromosome, complete genomeLysR family transcriptional regulator1e-1067
NC_012982:1899973:189997318999731900857885Hirschia baltica ATCC 49814, complete genometranscriptional regulator, LysR family2e-1066.6
NC_014307:1855356:188089118808911881796906Ralstonia solanacearum CFBP2957 chromosome, complete genomeLysR family transcriptional regulator2e-1066.6
NC_009439:3535152:355290635529063553790885Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator6e-1065.1
NC_010170:4196197:420587642058764206748873Bordetella petrii, complete genometranscriptional regulator, LysR-family9e-1064.3
NC_012580:796387:816123816123817061939Vibrio cholerae M66-2 chromosome II, complete sequenceLysR family transcriptional regulator1e-0963.9
NC_012583:861225:880962880962881900939Vibrio cholerae O395 chromosome chromosome II, complete sequencetranscriptional regulator, LysR family1e-0963.9
NC_016446:522936:542669542669543607939Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeLysR family transcriptional regulator1e-0963.9
NC_016945:822229:841962841962842900939Vibrio cholerae IEC224 chromosome II, complete sequenceLysR family transcriptional regulator1e-0963.9
NC_002506:822401:842137842137843075939Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetranscriptional regulator, LysR family1e-0963.9
NC_014323:3976351:400095440009544001847894Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein1e-0963.5
NC_005296:4574213:461506746150674615990924Rhodopseudomonas palustris CGA009, complete genometranscriptional regulator, LysR family3e-0962.8
NC_008027:713500:713582713582714532951Pseudomonas entomophila L48, complete genometranscriptional regulator, LysR family3e-0962.4
NC_007626:697926:713495713495714388894Magnetospirillum magneticum AMB-1, complete genomeTranscriptional regulator4e-0962.4
NC_009512:3068495:308259830825983083479882Pseudomonas putida F1, complete genometranscriptional regulator, LysR family6e-0961.6
NC_011283:2323687:233464923346492335515867Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator7e-0961.2
NC_020064:1409596:144578714457871446662876Serratia marcescens FGI94, complete genometranscriptional regulator1e-0860.5
NC_011992:1912200:192978919297891930700912Acidovorax ebreus TPSY, complete genometranscriptional regulator, LysR family1e-0860.5
NC_011186:515214:521813521813522745933Vibrio fischeri MJ11 chromosome II, complete sequencetranscriptional regulator, LysR family2e-0860.1
NC_008027:2996947:301307030130703013912843Pseudomonas entomophila L48, complete genometranscriptional regulator, LysR family2e-0860.1
NC_017030:6912830:692651169265116927452942Corallococcus coralloides DSM 2259 chromosome, complete genomeLysR family transcriptional regulator2e-0860.1
NC_009778:1222273:124138612413861242297912Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0859.7
NC_020260:1293860:131801713180171318928912Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-0859.7
NC_014034:1418681:144301014430101443876867Rhodobacter capsulatus SB1003 chromosome, complete genomeLysR family transcriptional regulator3e-0859.7
NC_015566:4547702:455487845548784555789912Serratia sp. AS12 chromosome, complete genomeLysR family transcriptional regulator3e-0859.3
NC_009512:2238437:224420022442002245156957Pseudomonas putida F1, complete genometranscriptional regulator, LysR family4e-0858.9
NC_014306:4901390:493026549302654931143879Erwinia billingiae Eb661, complete genomeTranscriptional regulator, LysR family5e-0858.5
NC_010943:1332243:134478413447841345635852Stenotrophomonas maltophilia K279a, complete genomeputative LysR family transcriptional regulator9e-0857.8
NC_010943:2091199:210373021037302104647918Stenotrophomonas maltophilia K279a, complete genomeputative LysR family transcriptional regulator2e-0757
NC_008322:373531:376102376102376998897Shewanella sp. MR-7, complete genometranscriptional regulator, LysR family2e-0756.6
NC_011071:1877500:189099818909981891915918Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, LysR family2e-0756.6
NC_015947:1877887:189137518913751892292918Burkholderia sp. JV3 chromosome, complete genomeLysR family transcriptional regulator2e-0756.6
NC_014306:3210311:321398632139863214903918Erwinia billingiae Eb661, complete genomeTranscriptional regulator, LysR family2e-0756.2
NC_007802:1484641:149382614938261494734909Jannaschia sp. CCS1, complete genometranscriptional regulator, LysR family3e-0756.2
NC_016514:891772:914628914628915524897Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YafC3e-0755.8
NC_012856:1080000:108545910854591086370912Ralstonia pickettii 12D chromosome 1, complete genometranscriptional regulator, LysR family5e-0755.5
NC_014541:4167916:417125541712554172199945Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, LysR family5e-0755.5
NC_014153:2077647:208523120852312086118888Thiomonas intermedia K12 chromosome, complete genometranscriptional regulator, LysR family6e-0755.1
NC_014306:3102000:310329631032963104204909Erwinia billingiae Eb661, complete genomeTranscriptional regulator, LysR family7e-0755.1
NC_017047:2079368:208807320880732088990918Rahnella aquatilis HX2 chromosome, complete genomeLysR family transcriptional regulator1e-0654.3
NC_021066:1712905:172925217292521730163912Raoultella ornithinolytica B6, complete genomeHTH-type transcriptional activator ttdR1e-0653.9
NC_014121:1101093:112738711273871128286900Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetranscriptional regulator, LysR family1e-0653.9
NC_012808:1122341:115155711515571152501945Methylobacterium extorquens AM1, complete genomeTranscriptional regulator, LysR family2e-0653.5
NC_015563:3511951:351544035154403516342903Delftia sp. Cs1-4 chromosome, complete genomeLysR family transcriptional regulator2e-0653.1
NC_011283:1811000:183321818332181834075858Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator2e-0653.1
NC_007492:2771021:2789206278920627902191014Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, LysR family4e-0652.4
NC_015566:3417951:345733734573373458242906Serratia sp. AS12 chromosome, complete genomeLysR family transcriptional regulator3e-0652.4
NC_005773:4539751:455518245551824556168987Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprobable transcriptional regulator, LysR family3e-0652.4
NC_014966:795311:795311795311796228918Vibrio vulnificus MO6-24/O chromosome II, complete sequenceLysR family transcripitonal regulator6e-0651.6
NC_015276:1426000:142949114294911430432942Marinomonas mediterranea MMB-1 chromosome, complete genometranscriptional regulator, LysR family9e-0651.2
NC_015677:285896:308759308759309706948Ramlibacter tataouinensis TTB310 chromosome, complete genomeLysR family transcriptional regulator9e-0651.2