Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:2108686 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
210868621096871002glycosyl transferase family 3QuickGO ontologyBLASTP
21096842110019336DsrC family proteinQuickGO ontologyBLASTP
21100162110312297DsrH family proteinQuickGO ontologyBLASTP
21103122110671360DsrE family proteinQuickGO ontologyBLASTP
21106732111104432DsrE family proteinQuickGO ontologyBLASTP
211116121125401380uracil-xanthine permeaseQuickGO ontologyBLASTP
21128552113526672protein of unknown function UPF0005QuickGO ontologyBLASTP
21147102115477768short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
21155132116391879transcriptional regulator LysR familyQuickGO ontologyBLASTP
211657021178471278Ribulose-bisphosphate carboxylaseQuickGO ontologyBLASTP
211785121192421392type III effector Hrp-dependent outerQuickGO ontologyBLASTP
211930321206461344major facilitator superfamily MFS_1QuickGO ontologyBLASTP
212075321222221470pyruvate kinaseQuickGO ontologyBLASTP
212255021238181269Phosphopyruvate hydrataseQuickGO ontologyBLASTP
21255892126491903transcriptional regulator LysR familyQuickGO ontologyBLASTP
21266222127368747short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
21274722128155684Glutathione S-transferase N-terminal domainQuickGO ontologyBLASTP
21281752128981807protein of unknown function UPF0153QuickGO ontologyBLASTP
21294572129837381helix-turn-helix- domain containing protein AraC typeQuickGO ontologyBLASTP
21300022130688687isochorismatase hydrolaseQuickGO ontologyBLASTP
21308962131357462Endoribonuclease L-PSPQuickGO ontologyBLASTP
21313772132363987transcriptional regulator LysR familyQuickGO ontologyBLASTP
21326542132926273Propeptide PepSY amd peptidase M4QuickGO ontologyBLASTP
21330962133422327hypothetical proteinBLASTP
21337742134568795protein of unknown function DUF1264QuickGO ontologyBLASTP
213538121365891209major facilitator superfamily MFS_1QuickGO ontologyBLASTP
21367462137351606transcriptional regulator TetR familyQuickGO ontologyBLASTP
213745321388141362Chloride channel coreQuickGO ontologyBLASTP
213895121403121362NaH antiporter NhaAQuickGO ontologyBLASTP
214086021423141455cation transporterQuickGO ontologyBLASTP