Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:3485000 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
348514834858527054-phosphopantetheinyl transferaseQuickGO ontologyBLASTP
348604234876821641integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
34876603488409750two component transcriptional regulatorQuickGO ontologyBLASTP
348927534921812907ribonucleotide-diphosphate reductase subunit alphaQuickGO ontologyBLASTP
349264934938991251ribonucleotide-diphosphate reductase subunit betaQuickGO ontologyBLASTP
349400934953221314hypothetical proteinBLASTP
34965073496683177hypothetical proteinBLASTP
349700634980671062aldoketo reductaseQuickGO ontologyBLASTP
34980873498971885LysR family transcriptional regulatorQuickGO ontologyBLASTP
34991243499315192hypothetical proteinBLASTP
34992993499634336hypothetical proteinBLASTP
34998593500758900LysR family transcriptional regulatorQuickGO ontologyBLASTP
35008793501580702NADPH dehydrogenase quinoneQuickGO ontologyBLASTP
35016163502359744methyltransferase type 12QuickGO ontologyBLASTP
35026443503084441hypothetical proteinBLASTP
35032993503646348protein of unknown function DUF861 cupin_3QuickGO ontologyBLASTP
35038153504291477proteinase inhibitor I11 ecotinQuickGO ontologyBLASTP
35044063505050645hypothetical proteinBLASTP
350520835072172010peptidase U32QuickGO ontologyBLASTP