Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:3535152 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
35343703535161792hydroxypyruvate isomeraseQuickGO ontologyBLASTP
353515235360428913-hydroxyisobutyrate dehydrogenaseQuickGO ontologyBLASTP
35361783537029852phosphonate ABC transporter periplasmic phosphonate-binding proteinQuickGO ontologyBLASTP
35370263537826801ABC transporter relatedQuickGO ontologyBLASTP
35378203538647828phosphonate ABC transporter inner membrane subunitQuickGO ontologyBLASTP
35386443539405762phosphonate ABC transporter inner membrane subunitQuickGO ontologyBLASTP
35395183540066549AraC family transcriptional regulatorQuickGO ontologyBLASTP
354043335419351503aldehyde dehydrogenaseQuickGO ontologyBLASTP
35421033542675573hypothetical protein
354297235446841713Fis family transcriptional regulatorQuickGO ontologyBLASTP
35453133546050738short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
35461843547113930LysR family transcriptional regulatorQuickGO ontologyBLASTP
35474093547699291hypothetical proteinBLASTP
35476963548514819NADPH dehydrogenase quinoneQuickGO ontologyBLASTP
35486043549542939LysR family transcriptional regulatorQuickGO ontologyBLASTP
354976435513861623major facilitator transporterQuickGO ontologyBLASTP
35514493552240792XRE family transcriptional regulatorQuickGO ontologyBLASTP
35523633552797435glutathione-dependent formaldehyde-activating GFAQuickGO ontologyBLASTP
35529063553790885LysR family transcriptional regulatorQuickGO ontologyBLASTP
35538493554721873AraC family transcriptional regulatorQuickGO ontologyBLASTP
35548593555614756short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP