Pre_GI: BLASTP Hits

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Query: NC_007953:314872:334745 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 334745, End: 335404, Length: 660

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007794:1504449:151167815116781512337660Novosphingobium aromaticivorans DSM 12444, complete genometranscriptional regulator, TetR family1e-65249
NC_008268:5745620:575548057554805756157678Rhodococcus sp. RHA1, complete genometranscriptional regulator, TetR family2e-57221
NC_017904:2724941:272761627276162728188573Mycobacterium sp. MOTT36Y chromosome, complete genomeTetR family transcriptional regulator6e-2097.4
NC_018524:1279156:129739812973981297970573Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeputative transcriptional regulator4e-1891.3
NC_016023:1083826:110000311000031100566564Bacillus coagulans 36D1 chromosome, complete genomeTetR family transcriptional regulator7e-1890.9
NC_010623:1871492:188609818860981886784687Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, TetR family2e-1789.4
NC_006361:498305:504157504157504795639Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator6e-1787.4
NC_008699:2916752:293651429365142937146633Nocardioides sp. JS614, complete genomeregulatory protein, TetR6e-1684.3
NC_004193:701622:715262715262715828567Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator8e-1684
NC_017904:1725180:174104217410421741812771Mycobacterium sp. MOTT36Y chromosome, complete genomeTetR family transcriptional regulator3e-1582
NC_013385:1064188:107194410719441072534591Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family7e-1580.5
NC_010612:6113155:612666161266616127263603Mycobacterium marinum M, complete genometranscriptional regulatory protein (probably TetR-family)1e-1480.1
NC_014830:3438504:347522834752283475842615Intrasporangium calvum DSM 43043 chromosome, complete genometranscriptional regulator, TetR family4e-1478.2
NC_019673:1988853:199991619999162000491576Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family6e-1477.4
NC_013205:854983:879742879742880350609Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, TetR family9e-1477
NC_008278:2732890:274044927404492741114666Frankia alni ACN14a, complete genomehypothetical protein9e-1477
NC_008699:833737:853126853126853728603Nocardioides sp. JS614, complete genomeregulatory protein, TetR1e-1376.6
NC_020133:5710661:572194157219415722498558Mycobacterium liflandii 128FXT, complete genomeTetR family transcriptional regulator2e-1375.9
NC_014831:1818968:182454118245411825230690Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, TetR family3e-1375.5
NC_008740:443274:492649492649493263615Marinobacter aquaeolei VT8, complete genometranscriptional regulator, TetR family2e-1272.8
NC_009848:3582384:359831935983193598969651Bacillus pumilus SAFR-032, complete genomeTetR family transcriptional regulator5e-1271.2
NC_006361:3615322:361669536166953617288594Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator6e-1270.9
NC_021184:1024305:104149110414911042111621Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator1e-1169.7
NC_016111:986936:998551998551999183633Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator2e-1169.3
NC_013595:8553904:856484385648438565427585Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family2e-1169.3
NC_015563:2656628:268139926813992682013615Delftia sp. Cs1-4 chromosome, complete genomeregulatory protein TetR6e-1167.4
NC_010086:871723:898594898594899370777Burkholderia multivorans ATCC 17616 chromosome 2, completetranscriptional regulator, TetR family9e-1167
NC_008600:2353696:236310023631002363594495Bacillus thuringiensis str. Al Hakam, complete genometranscriptional regulator, TetR family9e-1167
NC_018691:2254566:226531422653142265982669Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator1e-1067
NC_014834:2264108:229729222972922298074783Rhodopseudomonas palustris DX-1 chromosome, complete genomeTetR family transcriptional regulator4e-1065.1
NC_014758:310394:344457344457345041585Calditerrivibrio nitroreducens DSM 19672 chromosome, completetranscriptional regulator, tetr family8e-1063.9
NC_020302:3014483:304061930406193041248630Corynebacterium halotolerans YIM 70093 = DSM 44683, completetranscriptional regulator9e-1063.5
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein1e-0963.5
NC_016114:5539021:554076355407635541380618Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeTetR family transcriptional regulator3e-0962
NC_013665:2132000:213526921352692135904636Methanocella paludicola SANAE, complete genomeTetR family transcriptional regulator4e-0961.6
NC_009633:337706:353145353145353717573Alkaliphilus metalliredigens QYMF chromosome, complete genomeTetR family transcriptional regulator4e-0961.2
NC_006177:2398482:242190624219062422553648Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator5e-0961.2
NC_015593:158107:183024183024183683660Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeTetR family transcriptional regulator8e-0960.5
NC_010814:3673983:368707836870783687647570Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family8e-0960.5
NC_014335:2274774:227990022799002280316417Bacillus cereus biovar anthracis str. CI chromosome, completeTetR family transcriptional regulator1e-0860.1
NC_014732:141000:141391141391141990600Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completetranscriptional regulator, TetR family1e-0860.1
NC_012912:2426520:243471224347122435335624Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family1e-0860.1
NC_014500:2402881:242317224231722423798627Dickeya dadantii 3937 chromosome, complete genomeputative DNA-binding transcriptional regulatory family of the TetR family1e-0860.1
NC_017955:3670670:370022737002273700955729Modestobacter marinus, complete genomeHTH-type transcriptional regulator2e-0859.3
NC_015589:3556197:356332135633213563923603Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR2e-0858.9
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator3e-0858.5
NC_005957:4311679:432219943221994322786588Bacillus thuringiensis serovar konkukian str. 97-27, completetranscriptional regulator3e-0858.5
NC_011969:4235818:424498242449824245569588Bacillus cereus Q1 chromosome, complete genometranscriptional regulator3e-0858.5
NC_015563:3203012:321023432102343210932699Delftia sp. Cs1-4 chromosome, complete genomeTetR family transcriptional regulator4e-0858.2
NC_014624:1369642:138879613887961389392597Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator4e-0858.2
NC_002570:3911153:391820939182093918817609Bacillus halodurans C-125, complete genometranscriptional regulator (TetR/AcrR family)5e-0858.2
NC_011658:4301633:431215343121534312740588Bacillus cereus AH187 chromosome, complete genomeTetR family transcriptional regulator6e-0857.8
NC_013510:5499447:554217355421735542841669Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family6e-0857.4
NC_009428:833701:853580853580854185606Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeTetR family transcriptional regulator8e-0857.4
NC_011899:1437981:145036314503631450923561Halothermothrix orenii H 168, complete genometranscriptional regulator, TetR family8e-0857.4
NC_007517:2494000:250784425078442508413570Geobacter metallireducens GS-15, complete genometranscriptional regulator, TetR family1e-0756.6
NC_011979:773673:796097796097796687591Geobacter sp. FRC-32, complete genometranscriptional regulator, TetR family1e-0756.6
NC_016023:1538000:154173415417341542369636Bacillus coagulans 36D1 chromosome, complete genomeTetR family transcriptional regulator1e-0756.6
NC_002939:1021297:102380710238071024397591Geobacter sulfurreducens PCA, complete genometranscriptional regulator, TetR family2e-0756.2
NC_013929:3986272:400539140053914006197807Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_011894:3475775:348365834836583484347690Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, TetR family3e-0755.5
NC_008825:1113060:111747611174761118156681Methylibium petroleiphilum PM1, complete genomeputative transcription regulator protein3e-0755.5
NC_009328:2905000:290693829069382907564627Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator4e-0755.1
NC_019673:7598026:760271776027177603478762Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family4e-0755.1
NC_013385:1882549:191438119143811914974594Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family4e-0755.1
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family3e-0755.1
NC_010694:1966676:196889219688921969524633Erwinia tasmaniensis, complete genomeTetR-family transcriptional regulator3e-0755.1
NC_021171:4674086:468021546802154680892678Bacillus sp. 1NLA3E, complete genomeTetR family transcriptional regulator5e-0754.7
NC_008570:3220539:327467032746703275311642Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeTetR family regulatory protein5e-0754.7
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome5e-0754.7
NC_009633:2137999:215567921556792156287609Alkaliphilus metalliredigens QYMF chromosome, complete genomeTetR family transcriptional regulator5e-0754.7
NC_006510:2910000:291071129107112911337627Geobacillus kaustophilus HTA426, complete genometranscriptional regulator (TetR family)5e-0754.7
NC_018645:247917:262252262252262911660Desulfobacula toluolica Tol2, complete genomeTetR family transcriptional regulator4e-0754.7
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family7e-0754.3
NC_018750:6869675:688342368834236884253831Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family7e-0754.3
NC_008228:4696338:470983347098334710468636Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, TetR family6e-0754.3
NC_015424:3112637:315280931528093153447639Aeromonas veronii B565 chromosome, complete genomeTetR family transcriptional regulator6e-0754.3
NC_015172:2986867:302742730274273028068642Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, TetR family6e-0754.3
NC_011898:2509267:253223225322322532846615Clostridium cellulolyticum H10, complete genometranscriptional regulator, TetR family6e-0754.3
NC_015638:1824794:182757218275721828141570Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeTetR family transcriptional regulator6e-0754.3
NC_008025:2211813:223224322322432232830588Deinococcus geothermalis DSM 11300, complete genometranscriptional regulator, TetR family9e-0753.9
NC_004722:5194000:524727152472715247900630Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, TetR family9e-0753.9
NC_014335:5005267:502171150217115022340630Bacillus cereus biovar anthracis str. CI chromosome, completeTetR family transcriptional regulator9e-0753.9
NC_003909:4996783:504757850475785048207630Bacillus cereus ATCC 10987, complete genometranscriptional regulator, TetR family9e-0753.9
NC_006274:5122500:513844951384495139078630Bacillus cereus E33L, complete genometranscriptional regulator, TetR family9e-0753.9
NC_005945:5053000:506951050695105070139630Bacillus anthracis str. Sterne, complete genometranscriptional regulator, TetR family9e-0753.9
NC_012472:5094009:510921551092155109844630Bacillus cereus 03BB102, complete genometranscriptional regulator, TetR family9e-0753.9
NC_021175:1635796:165059516505951651161567Streptococcus oligofermentans AS 1.3089, complete genomeTetR/AcrR family transcriptional regulator9e-0753.9
NC_011969:4993386:504630450463045046933630Bacillus cereus Q1 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_011658:5087887:510215251021525102781630Bacillus cereus AH187 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_011773:5091609:512804351280435128672630Bacillus cereus AH820 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_012581:5052000:507083350708335071462630Bacillus anthracis str. CDC 684 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_007517:2515870:253419425341942534790597Geobacter metallireducens GS-15, complete genometranscriptional regulator, TetR family7e-0753.9
NC_016147:1788219:180650518065051807080576Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeTetR family transcriptional regulator7e-0753.9
NC_011725:5201995:525476552547655255394630Bacillus cereus B4264 chromosome, complete genomeTetR family transcriptional regulator8e-0753.9
NC_013283:113660:123911239112948558Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein8e-0753.9
NC_012673:2535427:257965825796582580236579Exiguobacterium sp. AT1b, complete genometranscriptional regulator, TetR family8e-0753.9
NC_008600:5046000:509679450967945097432639Bacillus thuringiensis str. Al Hakam, complete genometranscriptional regulator, TetR family9e-0753.9
NC_017200:5149528:518703751870375187666630Bacillus thuringiensis serovar finitimus YBT-020 chromosome,TetR family transcriptional regulator9e-0753.9
NC_016779:5009320:506248950624895063118630Bacillus cereus F837/76 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_014171:5107956:515937151593715160000630Bacillus thuringiensis BMB171 chromosome, complete genomeTetR family transcriptional regulator9e-0753.9
NC_012659:5031827:506820150682015068830630Bacillus anthracis str. A0248, complete genomeTetR family transcriptional regulator9e-0753.9
NC_007530:5033095:506830150683015068903603Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, tetr family1e-0653.5
NC_003997:5032969:506817550681755068777603Bacillus anthracis str. Ames, complete genometranscriptional regulator, TetR family1e-0653.5
NC_017094:828836:904444904444905103660Leptospirillum ferrooxidans C2-3, complete genomeTetR family transcriptional regulator1e-0653.5
NC_013385:1007616:100995610099561010600645Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family1e-0653.5
NC_009077:4810379:481319748131974813793597Mycobacterium sp. JLS, complete genometranscriptional regulator, TetR family1e-0653.5
NC_007954:1494291:149868114986811499301621Shewanella denitrificans OS217, complete genomeregulatory protein, TetR1e-0653.5
NC_018750:3481476:351235535123553512966612Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family1e-0653.5
NC_010545:2025000:203269620326962033367672Corynebacterium urealyticum DSM 7109, complete genomeputative transcriptional regulator (TetR family)1e-0653.5
NC_016771:5038435:505447550544755055077603Bacillus cereus NC7401, complete genomeTetR family transcriptional regulator1e-0653.5
NC_005957:5037499:507420550742055074834630Bacillus thuringiensis serovar konkukian str. 97-27, completetranscriptional regulator, TetR family9e-0753.5
NC_014220:2037560:204191920419192042590672Syntrophothermus lipocalidus DSM 12680 chromosome, complete genometranscriptional regulator, TetR family1e-0653.1
NC_013939:1927424:193303319330331933656624Deferribacter desulfuricans SSM1, complete genomeTetR family transcriptional regulator1e-0653.1
NC_018870:81396:813968139682133738Thermacetogenium phaeum DSM 12270 chromosome, complete genomeTetR-like transcriptional regulator1e-0653.1
NC_014152:191200:203522203522204064543Thermincola sp. JR, complete genometranscriptional regulator, TetR family1e-0653.1
NC_008268:6149576:615238661523866153054669Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, TetR family2e-0652.8
NC_010184:5085977:510274051027405103369630Bacillus weihenstephanensis KBAB4, complete genometranscriptional regulator, TetR family2e-0652.8
NC_014758:579741:595465595465596052588Calditerrivibrio nitroreducens DSM 19672 chromosome, completetranscriptional regulator, tetr family2e-0652.8
NC_011772:5158680:520892252089225209551630Bacillus cereus G9842, complete genometranscriptional regulator, TetR family2e-0652.8
NC_010382:1020516:102975210297521030384633Lysinibacillus sphaericus C3-41, complete genomeTetR family transcriptional regulator2e-0652.8
NC_017208:5305969:532188753218875322516630Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeTetR family transcriptional regulator2e-0652.8
NC_009921:5609770:565205756520575652785729Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family2e-0652.4
NC_009674:3903893:391946239194623920091630Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_015422:3366500:336988733698873370549663Alicycliphilus denitrificans K601 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_020126:7661551:768145276814527682090639Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator3e-0652
NC_009142:5459819:546278154627815463392612Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, TetR family3e-0652
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_003295:3421520:346908034690803469694615Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN3e-0652
NC_002570:1041342:106282010628201063431612Bacillus halodurans C-125, complete genometranscriptional regulator (TetR/AcrR family)3e-0652
NC_006322:1959918:196837919683791968957579Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-0652
NC_014500:842493:846764846764847381618Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator4e-0651.6
NC_006177:1060428:107883110788311079454624Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator4e-0651.6
NC_008463:4133700:414613741461374146754618Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator5e-0651.2
NC_009634:299327:323157323157323735579Methanococcus vannielii SB chromosome, complete genomeTetR family transcriptional regulator5e-0651.2
NC_010511:7024412:702935870293587030014657Methylobacterium sp. 4-46 chromosome, complete genomeTetR family transcriptional regulator7e-0650.8
NC_017506:1:166661666617247582Marinobacter adhaerens HP15 chromosome, complete genomeTetR family transcriptional regulator7e-0650.8
UCMB5137:1594000:160367516036751604283609Bacillus atrophaeus UCMB-5137transcriptional regulator, TetR family protein7e-0650.8
NC_013510:3117837:314603831460383146595558Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family7e-0650.8
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family7e-0650.8
NC_010814:190673:205816205816206403588Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family7e-0650.8
NC_010506:537833:555196555196555801606Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, TetR family7e-0650.8
NC_014831:1843835:186181618618161862391576Thermaerobacter marianensis DSM 12885 chromosome, complete genomeregulatory protein TetR6e-0650.8
NC_009439:918534:937355937355937975621Pseudomonas mendocina ymp, complete genomeTetR family transcriptional regulator8e-0650.4
NC_019897:73957:109118109118109699582Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator9e-0650.4
NC_010676:2720068:271940327194032720071669Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, TetR family9e-0650.4
NC_015589:2941953:295432629543262955000675Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR1e-0550.4
NC_013406:3583474:360123836012383601810573Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator1e-0550.4