Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:4696338 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
469633846981101773transcriptional regulator Fis familyQuickGO ontologyBLASTP
469861946997371119Alcohol dehydrogenase zinc-bindingQuickGO ontologyBLASTP
46998444700320477hypothetical proteinBLASTP
470092547033182394TonB-dependent receptor plugQuickGO ontologyBLASTP
47033344704272939beta-lactamase-likeQuickGO ontologyBLASTP
470519047066501461sulfataseQuickGO ontologyBLASTP
470673647090242289TonB-dependent receptorQuickGO ontologyBLASTP
47098334710468636transcriptional regulator TetR familyQuickGO ontologyBLASTP
47109194711848930beta-lactamase-likeQuickGO ontologyBLASTP
471268547141541470Twin-arginine translocation pathway signalQuickGO ontologyBLASTP
47141924714515324cytochrome c class IQuickGO ontologyBLASTP
47145774715029453hypothetical protein
47155484716150603hypothetical proteinBLASTP
47164004717119720PaaX-likeQuickGO ontologyBLASTP
471754547191911647acyl-CoA dehydrogenase-likeQuickGO ontologyBLASTP
47194614720165705hypothetical proteinBLASTP