Pre_GI: BLASTP Hits

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Query: NC_007606:1515403:1526379 Shigella dysenteriae Sd197, complete genome

Start: 1526379, End: 1527401, Length: 1023

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:1700447:1707032170703217082911260Escherichia coli SMS-3-5, complete genomehypothetical protein1e-108392
NC_011750:1809943:1820681182068118219461266Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-107389
NC_016822:1818897:1826129182612918272921164Shigella sonnei 53G, complete genomehypothetical protein9e-92337
NC_007384:1737885:1746807174680717479701164Shigella sonnei Ss046, complete genomehypothetical protein9e-92337
NC_013941:1857724:186938818693881870056669Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-58227
NC_013008:1971662:197850019785001979168669Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-58227
NC_011353:1971145:197952419795241980192669Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-58227
NC_002695:2056545:206492420649242065592669Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-58227
NC_002655:2015000:202291720229172023549633Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-51201
NC_017328:1835108:184645018464501847439990Shigella flexneri 2002017 chromosome, complete genomehypothetical protein1e-38160
NC_008258:1784637:179323117932311794220990Shigella flexneri 5 str. 8401, complete genomeputative glycoportein1e-38160
NC_004337:1783645:179390717939071794896990Shigella flexneri 2a str. 301, complete genomeputative glycoprotein1e-38160
NC_004741:1823000:183085318308531831842990Shigella flexneri 2a str. 2457T, complete genomeputative glycoprotein1e-38160
NC_004741:2169877:2184286218428621901225837Shigella flexneri 2a str. 2457T, complete genome5e-29128
NC_008258:1750964:1765649176564917692093561Shigella flexneri 5 str. 8401, complete genome5e-29128
NC_008258:1750964:1760732176073217631942463Shigella flexneri 5 str. 8401, complete genome6e-28125
NC_010498:4856011:485652548565254856737213Escherichia coli SMS-3-5, complete genomeIS1 transposase orfA2e-26120
NC_004431:4270305:428387242838724284084213Escherichia coli CFT073, complete genomehypothetical protein5e-26118
NC_011353:1971145:198027919802791980782504Escherichia coli O157:H7 str. EC4115 chromosome, complete genome5e-25115
NC_002695:2056545:206567920656792066182504Escherichia coli O157:H7 str. Sakai, complete genomeIpaH-like protein5e-25115
NC_002655:2015000:202229120222912022794504Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-25115
NC_013941:1857724:187014318701431870646504Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-25115
NC_004337:1783645:179331217933121793797486Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-23109
NC_008258:1784637:179264217926421793121480Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-23109
NC_007607:87000:104009104009104221213Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative iso-IS1 orf1e-1687.8
NC_010488:48868:566155661556827213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA4e-1685.9
NC_007946:1280508:129322912932291293441213Escherichia coli UTI89, complete genomehypothetical protein7e-1685.1
NC_010498:1035406:105072010507201050932213Escherichia coli SMS-3-5, complete genomeIS1 transposase orfA7e-1685.1
NC_010488:48868:651626516265374213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA7e-1685.1
NC_010488:48868:518765187652088213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA2e-1584
NC_002973:369650:3696503696503715061857Listeria monocytogenes str. 4b F2365, complete genomecell wall surface anchor family protein7e-1065.1
NC_013315:1707293:1727689172768917300882400Clostridium difficile CD196 chromosome, complete genomepenicillin-binding protein4e-0962.8
NC_015501:154590:1552031552031578692667Porphyromonas asaccharolytica DSM 20707 chromosome, completehypothetical protein9e-0858.2
NC_015160:2418317:242934924293492430212864Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein3e-0652.8