Pre_GI: BLASTP Hits

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Query: NC_007492:3954345:3962384 Pseudomonas fluorescens PfO-1, complete genome

Start: 3962384, End: 3963982, Length: 1599

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase2e-90333
NC_004578:2560473:2566716256671625683201605Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-78293
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin6e-51202
NC_004547:2810151:2825271282527128268811611Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase/recombinase2e-45183
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase4e-37156
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage8e-37155
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage8e-37155
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase5e-36152
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase5e-36152
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase5e-36152
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein5e-36152
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase5e-36152
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase5e-36152
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase5e-36152
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase5e-36152
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase5e-36152
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase6e-35149
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase2e-31137
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase9e-31135
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase8e-31135
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase7e-31135
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase3e-29130
NC_002947:1268089:1281215128121512829061692Pseudomonas putida KT2440, complete genomerecombinase-related protein7e-29129
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein5e-28126
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein5e-28126
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family1e-27125
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase1e-27124
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase6e-27122
NC_007384:2007467:2008715200871520102351521Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein1e-26122
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase2e-24114
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase3e-24113
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain5e-24112
NC_007347:3612918:3619050361905036208191770Ralstonia eutropha JMP134 chromosome 1, complete sequenceRecombinase2e-23110
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase2e-23110
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase2e-22107
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein3e-22106
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase2e-21104
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase3e-21103
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase5e-2099.8
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase6e-2099.4
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase8e-2099
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative6e-1995.9
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage8e-1995.5
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein9e-1789
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-1687.8
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase8e-1685.5
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1585.1
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase4e-1583.2
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase7e-1375.9
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase1e-1275.1
NC_014393:1022843:1035656103565610372451590Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain5e-1273.2
NC_013364:1997891:200295320029532003306354Escherichia coli O111:H- str. 11128, complete genome2e-1171.2
NC_012667:931390:9402429402429419121671Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein2e-1067.8
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase3e-1067
NC_012583:440420:4472494472494489071659Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein1e-0965.1
NC_009456:787322:8150358150358166931659Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein1e-0965.1
NC_015660:739040:7405367405367419271392Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein2e-0964.7
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein3e-0963.9
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase5e-0963.2
NC_010501:908000:9248249248249264701647Pseudomonas putida W619, complete genomeResolvase domain5e-0963.2
NC_018870:757416:8074028074028090751674Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase6e-0962.8
NC_014219:3188128:3199496319949632009321437Bacillus selenitireducens MLS10 chromosome, complete genomeResolvase domain protein1e-0861.6
NC_013552:1187299:1189131118913111907831653Dehalococcoides sp. VS, complete genomessrA integrase2e-0861.2
NC_020387:1257163:1258468125846812601351668Dehalococcoides mccartyi BTF08, complete genomesite-specific recombinase, resolvase family2e-0861.2
NC_016077:1876119:1899458189945819010351578Acidaminococcus intestini RyC-MR95 chromosome, complete genomeSite-specific recombinase2e-0860.8
NC_017904:4742775:4779594477959447809251332Mycobacterium sp. MOTT36Y chromosome, complete genomerecombinase2e-0860.8
NC_007356:1165760:1165760116576011674271668Dehalococcoides sp. CBDB1, complete genomeprobable site-specific recombinase3e-0860.5
NC_013890:1142500:1168802116880211704541653Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein3e-0860.5
NC_005070:1088808:1099790109979011016881899Synechococcus sp. WH 8102, complete genomepossible site-specific recombinase3e-0860.5
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase7e-0859.3
NC_010337:98974:1166181166181182281611Heliobacterium modesticaldum Ice1, complete genomeresolvase, n-terminal:recombinase, putative1e-0758.5
NC_015152:307500:3216333216333232701638Spirochaeta sp. Buddy chromosome, complete genomeresolvase domain1e-0758.5
NC_014915:2963500:3002419300241930038071389Geobacillus sp. Y412MC52 chromosome, complete genomeResolvase domain protein1e-0758.2
NC_013411:597235:6001286001286015161389Geobacillus sp. Y412MC61, complete genomeResolvase domain protein1e-0758.2
NC_018870:757416:8049218049218065311611Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase YokA2e-0758.2
NC_015737:831792:8446598446598463021644Clostridium sp. SY8519, complete genomehypothetical protein5e-0756.2
NC_014121:2514544:2525778252577825277872010Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0655.5
NC_014376:2964731:2982075298207529837301656Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein3e-0653.9
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome6e-0652.8
NC_017986:5509569:5518050551805055194201371Pseudomonas putida ND6 chromosome, complete genomephage recombinase9e-0652.4