Pre_GI: BLASTP Hits

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Query: NC_007384:2007467:2008715 Shigella sonnei Ss046, complete genome

Start: 2008715, End: 2010235, Length: 1521

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase0961
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein4e-164578
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family1e-162573
NC_004547:2810151:2825271282527128268811611Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase/recombinase2e-56220
NC_013364:1997891:200295320029532003306354Escherichia coli O111:H- str. 11128, complete genome5e-49196
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase8e-43175
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage7e-42172
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage7e-42172
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase2e-41170
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase2e-41170
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase2e-41170
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein2e-41170
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase2e-41170
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase2e-41170
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase2e-41170
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase2e-41170
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase2e-41170
NC_002947:1268089:1281215128121512829061692Pseudomonas putida KT2440, complete genomerecombinase-related protein1e-34147
NC_007384:1086025:1089944108994410911881245Shigella sonnei Ss046, complete genomehypothetical protein9e-33141
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein4e-31136
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase2e-30134
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase1e-30134
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase9e-29128
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain2e-28127
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase9e-28125
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-27125
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase1e-27124
NC_007492:3954345:3962384396238439639821599Pseudomonas fluorescens PfO-1, complete genomeRecombinase9e-27122
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase3e-26120
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase3e-26120
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase4e-26119
NC_007347:3612918:3619050361905036208191770Ralstonia eutropha JMP134 chromosome 1, complete sequenceRecombinase3e-25117
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase5e-25116
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase6e-25115
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase2e-24114
NC_004578:2560473:2566716256671625683201605Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-24112
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase4e-23109
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase2e-22107
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-1998.6
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein4e-1996.7
NC_005070:1088808:1099790109979011016881899Synechococcus sp. WH 8102, complete genomepossible site-specific recombinase2e-1894.7
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase2e-1894
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase5e-1893.2
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase5e-1893.2
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase4e-1893.2
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase9e-1892
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase1e-1791.7
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase2e-1790.9
NC_016077:1944000:1956301195630119578181518Acidaminococcus intestini RyC-MR95 chromosome, complete genomesite-specific recombinase3e-1687
NC_014246:1402500:1412236141223614137981563Mobiluncus curtisii ATCC 43063 chromosome, complete genomesite-specific recombinase2e-1584.3
NC_014828:1987487:1994530199453019961131584Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain4e-1583.2
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative1e-1482
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-1481.3
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-1480.5
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision2e-1377.8
NC_021066:3201500:3217811321781132193071497Raoultella ornithinolytica B6, complete genomeputative recombinase, DLP12 prophage3e-1377
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase4e-1376.6
NC_012667:931390:9402429402429419121671Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein4e-1376.6
NC_014121:2514544:2525778252577825277872010Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-1376.6
NC_012583:440420:4472494472494489071659Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein6e-1375.9
NC_009456:787322:8150358150358166931659Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein6e-1375.9
NC_014393:4775452:4782362478236247839481587Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain9e-1375.5
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-1275.5
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase1e-1275.1
NC_010501:908000:9248249248249264701647Pseudomonas putida W619, complete genomeResolvase domain3e-1273.6
NC_014393:1022843:1035656103565610372451590Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain4e-1273.2
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage8e-1168.9
NC_016822:1431200:1439276143927614411591884Shigella sonnei 53G, complete genomehypothetical protein2e-1068.2
NC_007432:654904:7003617003617017071347Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family1e-0965.1
NC_015660:739040:7405367405367419271392Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein1e-0964.7
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)4e-0963.5
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein1e-0862
NC_011898:3367457:3370767337076733723381572Clostridium cellulolyticum H10, complete genomeResolvase domain protein1e-0862
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome2e-0861.2
NC_013729:5982000:5988854598885459902331380Kribbella flavida DSM 17836, complete genomeRecombinase2e-0860.8
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein3e-0860.5
NC_018870:2316499:2329010232901023305781569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase8e-0858.9
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein9e-0858.9
NC_010320:1268355:1309657130965713112161560Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein9e-0858.9
NC_014538:1598106:1603166160316616047251560Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein9e-0858.9
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein1e-0758.5
NC_015500:1204501:1222227122222712239061680Treponema brennaborense DSM 12168 chromosome, complete genomeRecombinase7e-0755.8
NC_010981:425387:4447164447164462031488Wolbachia pipientis, complete genomesite-specific recombinase, resolvase family7e-0755.8
NC_009442:908507:9248809248809264421563Streptococcus suis 05ZYH33 chromosome, complete genomeDNA recombinase9e-0755.5
NC_010981:314745:3200063200063214871482Wolbachia pipientis, complete genomesite-specific recombinase, resolvase family9e-0755.5