Pre_GI: BLASTP Hits

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Query: NC_006905:2235607:2243740 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 2243740, End: 2243874, Length: 135

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:1632150:164933816493381649472135Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein5e-1992.8
NC_013421:701005:708322708322708594273Pectobacterium wasabiae WPP163, complete genomeInsertion element protein9e-1372
NC_013421:478586:484740484740485012273Pectobacterium wasabiae WPP163, complete genomeInsertion element protein9e-1372
NC_007607:87000:105382105382105654273Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceiso-IS1 ORF14e-1270.1
NC_004431:4270305:428996842899684290240273Escherichia coli CFT073, complete genomeInsertion element IS1 1/2/3/5/6 protein insA1e-1168.6
NC_008563:4739333:475752347575234757795273Escherichia coli APEC O1, complete genomeIS1 InsA protein1e-1168.6
NC_011742:4655373:467218546721854672457273Escherichia coli S88 chromosome, complete genometransposase InsA (ORF1) IS11e-1168.6
NC_009790:42112:431894318943461273Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS1, transposase orfA1e-1168.6
NC_004851:157675:172967172967173239273Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceiso-IS1 ORF14e-1167
NC_009708:874770:885448885448885711264Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeIS1, transposase orfA6e-1166.2
NC_006155:3805640:383444538344453834708264Yersinia pseudotuberculosis IP 32953, complete genomeInsertion element protein6e-1166.2
NC_017328:2586171:259805025980502598745696Shigella flexneri 2002017 chromosome, complete genomeIso-IS1 ORF22e-1064.7
NC_004741:2526421:253896725389672539239273Shigella flexneri 2a str. 2457T, complete genomeIS1N orfA1e-1064.7
NC_010634:3720214:374751737475173747780264Yersinia pseudotuberculosis PB1/+, complete genomeinsertion element protein5e-1063.2
NC_006625:1:847084708742273Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceiso-IS1 ORF15e-1063.2
NC_010465:893921:904585904585904848264Yersinia pseudotuberculosis YPIII, complete genomeInsertion element protein6e-1062.8
NC_012779:1449500:148326514832651483483219Edwardsiella ictaluri 93-146, complete genomeinsertion element iso-IS1N protein InsA6e-1062.8
NC_012779:1449500:147703114770311477303273Edwardsiella ictaluri 93-146, complete genomeinsertion element iso-IS1N protein InsA2e-0961.2
NC_004431:1119700:113119511311951131359165Escherichia coli CFT073, complete genomehypothetical protein2e-0960.8
NC_003143:1059580:108835610883561088619264Yersinia pestis CO92, complete genomeinsertion element protein8e-0959.3
NC_008150:317903:329522329522329785264Yersinia pestis Antiqua, complete genomeinsertion element protein8e-0959.3
NC_008149:3556999:358434035843403584603264Yersinia pestis Nepal516, complete genomeinsertion element protein8e-0959.3
NC_010159:172469:190049190049190312264Yersinia pestis Angola, complete genomeIS1, transposase orfA8e-0959.3
NC_009381:588137:598805598805599068264Yersinia pestis Pestoides F chromosome, complete genomeinsertion element protein8e-0959.3
NC_017265:809943:820623820623820886264Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,insertion element protein8e-0959.3
NC_005810:3917254:393061339306133930882270Yersinia pestis biovar Microtus str. 91001, complete genomeinsertion element protein7e-0959.3
NC_017168:3286:166491664916918270Yersinia pestis A1122 chromosome, complete genomeinsertion element protein7e-0959.3
NC_007946:1073135:108462810846281084792165Escherichia coli UTI89, complete genomehypothetical protein5e-0856.6
NC_012779:2856051:287188728718872872108222Edwardsiella ictaluri 93-146, complete genomeIS1-family insertion element protein7e-0855.8
NC_013892:853366:875192875192875347156Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA (fragment)3e-0650.8
NC_013892:274297:300625300625300780156Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA (fragment)3e-0650.8
NC_014228:1712339:174564217456421746040399Xenorhabdus nematophila ATCC 19061, complete genomeInsertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) (modular protein)3e-0650.4
NC_014228:1929665:197630819763081976703396Xenorhabdus nematophila ATCC 19061, complete genomeInsertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) (modular protein)3e-0650.4
NC_013892:1503162:154240215424021542677276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element protein4e-0650.1
NC_013892:1890500:197614219761421976417276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:2108175:216042121604212160696276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:3278647:328058832805883280863276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:3278647:331751733175173317792276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:3278647:331981233198123320087276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:3745749:376905437690543769329276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_013892:853366:875825875825876100276Xenorhabdus bovienii SS-2004 chromosome, complete genomeinsertion element iso-IS1N protein insA4e-0650.1
NC_010693:1:796679668118153Erwinia tasmaniensis plasmid pET46, complete sequence6e-0649.7