Pre_GI: BLASTP Hits

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Query: NC_004741:310382:319729 Shigella flexneri 2a str. 2457T, complete genome

Start: 319729, End: 320919, Length: 1191

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:309833:3210023210023221921191Shigella flexneri 2a str. 301, complete genomehypothetical protein0786
NC_012912:2901021:2923965292396529251881224Dickeya zeae Ech1591, complete genome2e-167588
NC_012912:2285778:2306875230687523080681194Dickeya zeae Ech1591, complete genometransposase IS4 family protein3e-167588
NC_012912:3749156:3757269375726937584621194Dickeya zeae Ech1591, complete genometransposase IS4 family protein6e-167587
NC_012779:2755338:2769913276991327710881176Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-130466
NC_010067:191190:194492194492195436945Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-106384
NC_006371:1848487:1856764185676418579511188Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical transposase of Tn103e-58226
NC_010410:3606826:3661770366177036630201251Acinetobacter baumannii AYE, complete genometransposase of IS10A, IS4 family3e-52206
NC_008750:1659095:1662511166251116637611251Shewanella sp. W3-18-1, complete genometransposase, IS4 family protein3e-52206
NC_008321:2649781:2678296267829626794981203Shewanella sp. MR-4, complete genometransposase, IS4 family protein2e-51203
NC_007954:2440000:2449266244926624504681203Shewanella denitrificans OS217, complete genometransposase, IS42e-50199
NC_009784:1231791:1242001124200112432001200Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein3e-50199
NC_009783:1665610:1670318167031816715171200Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein6e-50198
NC_013960:452493:4631214631214642661146Nitrosococcus halophilus Nc4 chromosome, complete genometransposase IS4 family protein1e-49197
NC_004337:3049118:3099723309972331009311209Shigella flexneri 2a str. 301, complete genomeiso-IS10R ORF2e-49196
NC_011147:4460726:4489020448902044902281209Salmonella enterica subsp. enterica serovar Paratyphi A strIS10 transposase1e-48194
NC_011149:309556:3314183314183326261209Salmonella enterica subsp. enterica serovar Agona str. SL483,IS10 transposase1e-48194
NC_011749:34056:4120341203423301128Escherichia coli UMN026 plasmid p1ESCUM, complete sequencetransposase, IS4 family, IS101e-48194
NC_020418:448687:4612914612914624991209Morganella morganii subsp. morganii KT, complete genomeMobile element protein1e-48194
NC_012947:1769438:1791810179181017930181209Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein1e-48194
NC_009633:337706:3428083428083440161209Alkaliphilus metalliredigens QYMF chromosome, complete genometransposase, IS4 family protein1e-48194
NC_006905:3717306:3738634373863437398421209Salmonella enterica subsp. enterica serovar Choleraesuis strtransposase of Tn101e-48194
NC_010498:4856011:4872207487220748734151209Escherichia coli SMS-3-5, complete genomeIS10 transposase1e-48194
NC_010939:405477:4133794133794145871209Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeiso-IS10R ORF1e-48194
NC_006905:946418:9586169586169598241209Salmonella enterica subsp. enterica serovar Choleraesuis strtransposase of Tn101e-48194
NC_010939:1986263:2027359202735920285671209Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeiso-IS10R ORF1e-48194
NC_006905:3780000:3792031379203137932391209Salmonella enterica subsp. enterica serovar Choleraesuis strtransposase of Tn101e-48194
NC_020418:448687:4535674535674547751209Morganella morganii subsp. morganii KT, complete genomeMobile element protein1e-48194
NC_012947:1769438:1795281179528117964891209Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein1e-48194
CU928145:4950723:4967418496741849686261209Escherichia coli 55989 chromosome, complete genometransposase, IS4 family, IS10L9e-49194
NC_003198:1908238:1917993191799319192011209Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transposase9e-49194
NC_004337:2035945:2047253204725320484611209Shigella flexneri 2a str. 301, complete genomeiso-IS10R ORF9e-49194
NC_011083:4547825:4600289460028946014971209Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase (IS4 family)9e-49194
CU928145:4950723:4976480497648049776881209Escherichia coli 55989 chromosome, complete genometransposase, IS4 family, IS10L9e-49194
NC_011748:4950723:4969248496924849704561209Escherichia coli 55989, complete genometransposase, IS4 family, IS10L9e-49194
CU928145:4950723:4969248496924849704561209Escherichia coli 55989 chromosome, complete genometransposase, IS4 family, IS10L9e-49194
NC_004337:3049118:3077718307771830789261209Shigella flexneri 2a str. 301, complete genomeiso-IS10R ORF9e-49194
NC_003384:157158:1832301832301844381209Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidtransposase9e-49194
NC_011748:4950723:4976480497648049776881209Escherichia coli 55989, complete genometransposase, IS4 family, IS10L9e-49194
CU928145:3360967:3388044338804433892521209Escherichia coli 55989 chromosome, complete genometransposase, IS4 family, IS10L9e-49194
NC_011748:3360967:3388044338804433892521209Escherichia coli 55989, complete genometransposase, IS4 family, IS10L9e-49194
NC_004337:1065609:1076772107677210779801209Shigella flexneri 2a str. 301, complete genomeiso-IS10R ORF9e-49194
NC_004337:2185282:2186692218669221879001209Shigella flexneri 2a str. 301, complete genomeiso-IS10R ORF9e-49194
NC_011748:4950723:4967418496741849686261209Escherichia coli 55989, complete genometransposase, IS4 family, IS10L9e-49194
NC_009784:1231791:1243329124332912445221194Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein9e-44177
NC_009783:1637000:1653840165384016550331194Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein2e-43176
NC_008345:3756977:3765462376546237666551194Shewanella frigidimarina NCIMB 400, complete genometransposase, IS4 family protein4e-43175
NC_004347:718091:7462307462307474441215Shewanella oneidensis MR-1, complete genomeISSod3, transposase5e-43175
NC_016830:2247789:2257555225755522587841230Pseudomonas fluorescens F113 chromosome, complete genometransposase, IS42e-41170
NC_008321:2922000:2928335292833529295491215Shewanella sp. MR-4, complete genometransposase, IS4 family protein2e-41170
NC_009052:1899954:1914949191494919163311383Shewanella baltica OS155, complete genometransposase, IS4 family protein3e-41169
NC_010688:673454:6883976883976896111215Xanthomonas campestris pv. campestris, complete genomeIS1481 transposase6e-41168
NC_017271:4410500:4425282442528244264961215Xanthomonas campestris pv. raphani 756C chromosome, completetransposase2e-40167
NC_003902:2211790:2222892222289222241061215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_003902:4252000:4258232425823242594461215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_003902:155627:1641481641481653621215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_003902:1680414:1686863168686316880771215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_003902:4989855:4998069499806949992831215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_003902:1858349:1914602191460219158161215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_010688:69458:8021380213814271215Xanthomonas campestris pv. campestris, complete genomeIS1481 transposase1e-40167
NC_007086:3118116:3124218312421831254321215Xanthomonas campestris pv. campestris str. 8004, complete genomeIS1481 transposase1e-40167
NC_003902:714478:7309557309557321691215Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase1e-40167
NC_020541:268406:2842482842482854051158Rhodanobacter sp. 2APBS1, complete genometransposase family protein2e-40166
NC_007086:459934:4665264665264676831158Xanthomonas campestris pv. campestris str. 8004, complete genome2e-40166
NC_012560:2546000:2558147255814725593491203Azotobacter vinelandii DJ, complete genomeTransposase, IS45e-40165
NC_021150:2546000:2558159255815925593611203Azotobacter vinelandii CA6, complete genomeTransposase, IS45e-40165
NC_003919:2233000:2241752224175222429661215Xanthomonas axonopodis pv. citri str. 306, complete genomeISxac1 transposase3e-38159
NC_003919:103000:1092671092671104811215Xanthomonas axonopodis pv. citri str. 306, complete genomeISxac1 transposase3e-38159
NC_003919:169510:1793281793281805421215Xanthomonas axonopodis pv. citri str. 306, complete genomeISxac1 transposase3e-38159
NC_003919:2233000:2253897225389722551111215Xanthomonas axonopodis pv. citri str. 306, complete genomeISxac1 transposase3e-38159
NC_010688:449649:4537474537474549311185Xanthomonas campestris pv. campestris, complete genomeIS1481 transposase2e-37157
NC_004347:4441110:4451489445148944524931005Shewanella oneidensis MR-1, complete genomehypothetical transposase1e-36154
NC_017267:2326443:2340837234083723419941158Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeISxac1 transposase6e-36152
NC_017267:2326443:2333759233375923348741116Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeISxac1 transposase5e-36152
NC_006834:1602994:1605788160578816070111224Xanthomonas oryzae pv. oryzae KACC10331, complete genomeISxac1 transposase2e-35150
NC_003902:4252000:426528542652854266274990Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase2e-35149
NC_010688:2781624:281526728152672816256990Xanthomonas campestris pv. campestris, complete genomeIS1481 transposase2e-35149
NC_003902:461808:466271466271467092822Xanthomonas campestris pv. campestris str. ATCC 33913, completeIS1481 transposase4e-29129
NC_007086:4610819:462452446245244625438915Xanthomonas campestris pv. campestris str. 8004, complete genome4e-1995.9
NC_009778:1717458:174338817433881743657270Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-1892.4
NC_015711:606306:6144876144876156441158Myxococcus fulvus HW-1 chromosome, complete genometransposase IS4 family protein4e-1789.4
NC_007086:5064053:507296350729635073481519Xanthomonas campestris pv. campestris str. 8004, complete genomeIS1481 transposase1e-1377.8
NC_010067:191190:194213194213194431219Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1376.3
NC_010162:9727465:974248097424809743346867Sorangium cellulosum 'So ce 56', complete genometransposase7e-1375.1
NC_011145:4628000:4636853463685346380071155Anaeromyxobacter sp. K, complete genometransposase IS4 family protein5e-1272.4
NC_008253:3941938:397610639761063976387282Escherichia coli 536, complete genomehypothetical protein2e-1170.5
NC_005126:3485330:350645035064503506665216Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-1067.4
NC_008750:2332000:234896523489652349402438Shewanella sp. W3-18-1, complete genometransposase, IS4 family protein1e-0758.2
NC_008750:2332000:234831523483152348668354Shewanella sp. W3-18-1, complete genome6e-0652.4