Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4606486 Pseudomonas fluorescens Pf-5, complete genome

Start: 4606486, End: 4607796, Length: 1311

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4204235:4208965420896542102751311Pseudomonas syringae pv. tomato str. DC3000, complete genometrigger factor0796
NC_002947:2589951:2626913262691326282441332Pseudomonas putida KT2440, complete genometrigger factor0760
NC_021150:2348214:2358627235862723599371311Azotobacter vinelandii CA6, complete genometrigger factor0720
NC_012560:2348202:2358615235861523599251311Azotobacter vinelandii DJ, complete genometrigger factor0720
NC_007645:2204066:2209109220910922104491341Hahella chejuensis KCTC 2396, complete genometrigger factor1e-132473
NC_010995:2312901:2324459232445923257721314Cellvibrio japonicus Ueda107, complete genometrigger factor2e-127456
NC_004337:367687:3902323902323915301299Shigella flexneri 2a str. 301, complete genometrigger factor1e-121436
NC_017328:385552:4080964080964093941299Shigella flexneri 2002017 chromosome, complete genometrigger factor Tig1e-121436
NC_015663:2694373:2732886273288627341841299Enterobacter aerogenes KCTC 2190 chromosome, complete genometrigger factor5e-120431
NC_007298:1824335:1847131184713118484351305Dechloromonas aromatica RCB, complete genometrigger factor7e-98357
NC_016632:1049510:1055164105516410564621299Serratia symbiotica str. 'Cinara cedri' chromosome, completetig peptidyl-prolyl cis/trans isomerase (trigger factor)1e-91337
NC_008702:2259430:2274050227405022753631314Azoarcus sp. BH72, complete genometrigger factor2e-91337
NC_010645:1523867:1545996154599615473061311Bordetella avium 197N, complete genometrigger factor5e-88325
NC_015581:771482:8025498025498038621314Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeTrigger factor9e-87320
NC_010524:2761394:2775259277525927765661308Leptothrix cholodnii SP-6, complete genometrigger factor3e-86319
NC_002927:2338549:2381475238147523827851311Bordetella bronchiseptica RB50, complete genometrigger factor3e-85315
NC_011992:1179084:1183753118375311850631311Acidovorax ebreus TPSY, complete genometrigger factor3e-83309
NC_008782:1277117:1281785128178512830951311Acidovorax sp. JS42, complete genometrigger factor3e-83309
NC_015222:2475792:2485807248580724871111305Nitrosomonas sp. AL212 chromosome, complete genometrigger factor1e-82307
NC_003919:1203405:1231479123147912327711293Xanthomonas axonopodis pv. citri str. 306, complete genometrigger factor1e-75284
NC_002488:1099975:1136247113624711375421296Xylella fastidiosa 9a5c, complete genometrigger factor7e-68258
NC_004556:531000:5633185633185646131296Xylella fastidiosa Temecula1, complete genometrigger factor3e-67256
NC_010577:530917:5631265631265644211296Xylella fastidiosa M23, complete genometrigger factor3e-67256
NC_020300:646500:6486226486226500491428Bartonella australis Aust/NH1, complete genometrigger factor1e-58227
NC_020301:669000:6693446693446707711428Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genometrigger factor2e-57223
NC_011979:2892119:2897032289703228983391308Geobacter sp. FRC-32, complete genometrigger factor7e-54211
NC_009483:2201986:2217011221701122183121302Geobacter uraniireducens Rf4 chromosome, complete genometrigger factor2e-52206
NC_007940:1435701:1457403145740314587401338Rickettsia bellii RML369-C, complete genomeTrigger factor1e-50201
NC_002939:1926084:1958330195833019596251296Geobacter sulfurreducens PCA, complete genometrigger factor2e-50199
NC_007205:841818:8432268432268446591434Candidatus Pelagibacter ubique HTCC1062, complete genometrigger factor7e-47188
NC_011969:4140000:4170552417055241718291278Bacillus cereus Q1 chromosome, complete genometrigger factor2e-46186
NC_012659:4273606:4282668428266842839451278Bacillus anthracis str. A0248, complete genometrigger factor8e-46184
NC_012472:4255729:4287373428737342886501278Bacillus cereus 03BB102, complete genometrigger factor8e-46184
NC_003997:4273579:4282641428264142839181278Bacillus anthracis str. Ames, complete genometrigger factor8e-46184
NC_004722:4405363:4428541442854144298181278Bacillus cereus ATCC 14579, complete genometrigger factor2e-45183
NC_014171:4317520:4343450434345043447271278Bacillus thuringiensis BMB171 chromosome, complete genometrigger factor2e-45183
NC_017208:4435573:4458117445811744593941278Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetrigger factor2e-45183
NC_014335:4181710:4213358421335842146351278Bacillus cereus biovar anthracis str. CI chromosome, completetrigger factor2e-45183
NC_009697:3409185:3418227341822734195191293Clostridium botulinum A str. ATCC 19397 chromosome, completetrigger factor4e-45182
NC_011768:1889853:1907526190752619088421317Desulfatibacillum alkenivorans AK-01, complete genometrigger factor2e-44179
NC_018643:482676:4850734850734865211449Alpha proteobacterium HIMB5 chromosome, complete genometrigger factor1e-43177
NC_007759:1571425:1578705157870515800361332Syntrophus aciditrophicus SB, complete genometrigger factor, ppiase8e-43174
NC_013315:3689422:3698958369895837003011344Clostridium difficile CD196 chromosome, complete genometrigger factor5e-42172
NC_021182:1654903:1673454167345416747491296Clostridium pasteurianum BC1, complete genometrigger factor1e-41171
NC_019970:813917:8139178139178152151299Thermoanaerobacterium thermosaccharolyticum M0795, complete genometrigger factor6e-41168
NC_016627:762000:7845137845137857991287Clostridium clariflavum DSM 19732 chromosome, complete genometrigger factor2e-40167
NC_013517:2437574:2447293244729324485851293Sebaldella termitidis ATCC 33386, complete genometrigger factor6e-40165
NC_011830:4645453:4646758464675846480381281Desulfitobacterium hafniense DCB-2, complete genometrigger factor3e-39163
NC_003888:2814360:2846000284600028474061407Streptomyces coelicolor A3(2), complete genometrigger factor2e-38160
NC_009012:3224000:3231571323157132328571287Clostridium thermocellum ATCC 27405, complete genometrigger factor2e-38160
NC_020126:2883194:2896262289626228975391278Myxococcus stipitatus DSM 14675, complete genometrigger factor4e-38159
NC_010424:1563033:1564967156496715662831317Candidatus Desulforudis audaxviator MP104C, complete genometrigger factor6e-38158
NC_010001:473354:4788754788754801611287Clostridium phytofermentans ISDg, complete genometrigger factor3e-37156
NC_013929:6663889:6672015667201566734151401Streptomyces scabiei 87.22 chromosome, complete genomecell division trigger factor4e-37155
NC_017294:327433:3365353365353378361302Candidatus Arthromitus sp. SFB-mouse-Yit, complete genometrigger factor protein7e-37155
NC_013171:416279:4217064217064230611356Anaerococcus prevotii DSM 20548, complete genometrigger factor3e-36152
NC_013740:571879:5917435917435930591317Acidaminococcus fermentans DSM 20731, complete genometrigger factor9e-36151
NC_021177:2451000:2461753246175324631471395Streptomyces fulvissimus DSM 40593, complete genomeTIG Trigger factor2e-35150
NC_016584:5420823:5440964544096454422471284Desulfosporosinus orientis DSM 765 chromosome, complete genometrigger factor4e-35149
NC_016114:4922630:4930124493012449315241401Streptomyces flavogriseus ATCC 33331 chromosome, complete genometrigger factor2e-34147
NC_012039:1399699:1424174142417414254931320Campylobacter lari RM2100, complete genometrigger factor3e-33143
NC_019673:1420198:1440083144008314414411359Saccharothrix espanaensis DSM 44229 complete genomeTrigger factor7e-33142
NC_014210:4053094:4065258406525840667031446Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,trigger factor9e-33141
NC_012440:1215838:1243221124322112445611341Persephonella marina EX-H1, complete genometrigger factor5e-32139
NC_002937:1395977:1409785140978514110861302Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetrigger factor6e-32138
NC_014844:2028666:2030802203080220322261425Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometrigger factor9e-32138
NC_014165:2888961:2901500290150029028911392Thermobispora bispora DSM 43833 chromosome, complete genometrigger factor1e-31137
NC_007760:3848190:3862067386206738633561290Anaeromyxobacter dehalogenans 2CP-C, complete genometrigger factor8e-31135
NC_004061:498483:5196985196985210261329Buchnera aphidicola str. Sg (Schizaphis graminum), complete genometrigger factor3e-30133
NC_015391:1323171:1326977132697713282571281Carnobacterium sp. 17-4 chromosome, complete genometrigger factor3e-30133
NC_017187:1580988:1599616159961616009171302Arcobacter butzleri ED-1, complete genometrigger factor2e-29130
NC_007797:1016456:1032081103208110334001320Anaplasma phagocytophilum HZ, complete genomeputative trigger factor5e-29129
NC_014355:220002:2285192285192298441326Candidatus Nitrospira defluvii, complete genometrigger factor (tF)3e-28126
NC_015671:2371632:2374715237471523760761362Cellvibrio gilvus ATCC 13127 chromosome, complete genometrigger factor7e-28125
NC_017259:480656:4972764972764986041329Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,trigger factor2e-27124
NC_017955:1667500:1685591168559116870751485Modestobacter marinus, complete genomepeptidyl-prolyl cis/trans isomerase, Trigger factor7e-27122
NC_017098:1278712:1311226131122613125781353Spirochaeta africana DSM 8902 chromosome, complete genometrigger factor5e-27122
NC_015578:1582827:1587188158718815885491362Treponema primitia ZAS-2 chromosome, complete genometrigger factor8e-27121
NC_014314:576465:6532266532266546621437Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completetrigger factor2e-26120
NC_006055:456711:4746344746344759141281Mesoplasma florum L1, complete genometrigger factor, prolyl isomerase3e-26120
NC_014550:2091797:2103916210391621052471332Arthrobacter arilaitensis Re117, complete genometrigger factor3e-25116
NC_013714:1521404:1539526153952615408961371Bifidobacterium dentium Bd1, complete genometig Trigger factor, PPIase5e-25115
NC_009342:2528426:2543233254323325445821350Corynebacterium glutamicum R chromosome, complete genometrigger factor1e-24114
NC_017256:515579:5192635192635205821320Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,trigger factor1e-24114
NC_008618:1206157:1223947122394712253171371Bifidobacterium adolescentis ATCC 15703, complete genometrigger factor9e-24111
NC_015682:736746:7628807628807641751296Thermodesulfobacterium sp. OPB45 chromosome, complete genomeTrigger factor5e-23108
NC_013771:1171251:1198270119827011996461377Cyanobacterium UCYN-A, complete genometrigger factor1e-22107
NC_017253:509494:5193365193365206641329Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,trigger factor2e-22107
NC_002528:505951:5184355184355197631329Buchnera aphidicola str. APS (Acyrthosiphon pisum), completetrigger factor5e-22105
NC_007798:652317:6680866680866693871302Neorickettsia sennetsu str. Miyayama, complete genomeputative trigger factor2e-20100
NC_008710:621822:6407986407986421441347Borrelia turicatae 91E135, complete genometrigger factor, ppiase5e-2099.4
NC_014960:1835697:1857561185756118590301470Anaerolinea thermophila UNI-1, complete genometrigger factor6e-1995.5
NC_008025:430487:4445274445274458761350Deinococcus geothermalis DSM 11300, complete genometrigger factor-like protein4e-1892.8
NS_000195:1257834:1272654127265412739491296Candidatus Cloacamonas acidaminovoranshypothetical protein6e-1892.4
NC_013894:543901:5547405547405560351296Thermocrinis albus DSM 14484 chromosome, complete genometrigger factor2e-1790.9
NC_010001:232976:2536762536762547161041Clostridium phytofermentans ISDg, complete genomepeptidylprolyl isomerase FKBP-type3e-1790.1
NC_013170:1020339:1038234103823410398771644Cryptobacterium curtum DSM 15641, complete genometrigger factor7e-1685.5
NC_013204:2234860:2260414226041422619191506Eggerthella lenta DSM 2243, complete genometrigger factor2e-1584
NC_011661:1100576:1107924110792411092191296Dictyoglomus turgidum DSM 6724, complete genometrigger factor5e-1479.3
NC_016148:1105669:1128861112886111302341374Thermovirga lienii DSM 17291 chromosome, complete genometrigger factor4e-1376.3
NC_004663:4977635:4996162499616249975171356Bacteroides thetaiotaomicron VPI-5482, complete genomeFKBP-type peptidyl-prolyl cis-transisomerase (trigger factor)5e-1272.8
NC_014041:661352:6683626683626696841323Zunongwangia profunda SM-A87 chromosome, complete genometrigger factor3e-1170.1
NC_013522:991649:99936699936610007091344Thermanaerovibrio acidaminovorans DSM 6589, complete genometrigger factor8e-1168.6
NC_015510:3543352:3572127357212735735421416Haliscomenobacter hydrossis DSM 1100 chromosome, complete genometrigger factor2e-1067
NC_015311:294283:2963902963902977571368Prevotella denticola F0289 chromosome, complete genometrigger factor5e-1066.2
NC_011565:777929:7798557798557811831329Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,trigger factor9e-0858.5
NC_015846:790374:8108608108608121911332Capnocytophaga canimorsus Cc5 chromosome, complete genomepeptidyl-prolyl cis-trans isomerase, trigger factor2e-0757.8
NC_019904:5526000:5542953554295355442811329Echinicola vietnamensis DSM 17526 chromosome, complete genometrigger factor2e-0653.9
NC_017094:828836:8303608303608317421383Leptospirillum ferrooxidans C2-3, complete genometrigger factor protein4e-0653.1
NC_011653:1226035:1250572125057212518791308Thermosipho africanus TCF52B, complete genometrigger factor5e-0652.8