Pre_GI: BLASTP Hits

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Query: NC_003198:1908238:1932482 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 1932482, End: 1933558, Length: 1077

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:1873805:1886389188638918874651077Shigella flexneri 5 str. 8401, complete genomeputative phage integrase protein0718
NC_011094:1923870:1945403194540319464821080Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase7e-152536
NC_011294:1220526:1226471122647112275501080Salmonella enterica subsp. enterica serovar Enteritidis strintegrase2e-151535
NC_011080:1944226:1972465197246519735441080Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase3e-150531
NC_011205:1345511:1351456135145613525351080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage integrase7e-150530
NC_011205:1391971:1399187139918714002661080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase4e-148524
NC_010102:1137247:1149438114943811505171080Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-147522
NC_003197:1945858:196702619670261967922897Salmonella typhimurium LT2, complete genome5e-125447
NC_016810:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium strIntegrase5e-125447
NC_016856:1957263:197843119784311979327897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase5e-125447
NC_016857:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage integrase protein5e-125447
NC_016863:1905454:192662219266221927518897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage integrase protein5e-125447
NC_017046:1902788:192395719239571924853897Salmonella enterica subsp. enterica serovar Typhimurium str. 798Integrase5e-125447
NC_011083:1993672:201608920160892016943855Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integrase3e-118425
NC_016860:1943203:196260919626091963463855Salmonella enterica subsp. enterica serovar Typhimurium strintegrase3e-118425
NC_010102:1137247:114318211431821144009828Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-114413
NC_013850:1887556:1893425189342518945101086Klebsiella variicola At-22 chromosome, complete genomelambda integrase1e-103376
NC_012125:1897611:190354519035451904273729Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein6e-88324
NC_016831:1690811:171376217137621714373612Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-77290
NC_011080:1944226:195729619572961957808513Salmonella enterica subsp. enterica serovar Newport str. SL254,7e-72271
NC_011601:1039500:1043517104351710445901074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase5e-71268
NC_013364:2898964:2916736291673629178061071Escherichia coli O111:H- str. 11128, complete genomeputative integrase4e-69262
NC_013941:975353:9807899807899818591071Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family5e-65248
NC_012967:786534:7879527879527890221071Escherichia coli B str. REL606 chromosome, complete genomeintegrase5e-65248
NC_011601:717072:7208917208917219611071Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase6e-65248
NC_006511:1063249:106919410691941070035842Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-65247
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase2e-63243
NC_012779:1966205:1973860197386019749541095Edwardsiella ictaluri 93-146, complete genomeintegrase8e-59227
NC_013508:1687432:1700197170019717012911095Edwardsiella tarda EIB202, complete genomeputative phage integrase protein2e-58226
NC_013422:1755875:1797967179796717991241158Halothiobacillus neapolitanus c2, complete genomelambda integrase5e-54211
NC_013941:1613595:162264716226471623387741Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeintegrase5e-51201
NC_011353:1716037:172511817251181725858741Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-50198
NC_003197:1945858:195783519578351958203369Salmonella typhimurium LT2, complete genome1e-49197
NC_011080:1944226:196285119628511963219369Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein1e-49197
NC_016810:1903426:191540319154031915771369Salmonella enterica subsp. enterica serovar Typhimurium str1e-49197
NC_016860:1943203:195518019551801955548369Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein1e-49197
NC_016863:1905454:191743119174311917799369Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein1e-49197
NC_012947:3015985:302838230283823029305924Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelambda integrase8e-50197
NC_011083:1993672:200564220056422006010369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein1e-49197
NC_015062:99969:1087051087051098291125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencelambda integrase3e-49196
NC_011147:1057259:107796010779601078328369Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-49195
NC_006511:1063249:108395010839501084318369Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cytoplasmic protein4e-49195
NC_017060:59500:1055351055351066591125Rahnella aquatilis HX2 plasmid PRA1, complete sequencelambda integrase1e-48194
NC_006905:1961774:197374719737471974115369Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein1e-48194
NC_011601:1466496:147555814755581476250693Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome8e-48191
NC_002655:2264773:228294922829492283650702Escherichia coli O157:H7 EDL933, complete genomeputative integrase fragment1e-47190
NC_002695:1794635:180352718035271804219693Escherichia coli O157:H7 str. Sakai, complete genomeintegrase5e-47188
NC_013008:1715831:172409317240931724785693Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase5e-47188
NC_013361:1754346:176509417650941765786693Escherichia coli O26:H11 str. 11368 chromosome, complete genome5e-47188
NC_011770:1431740:1433854143385414349571104Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative3e-46186
NC_007712:2897000:2906392290639229075161125Sodalis glossinidius str. 'morsitans', complete genomephage integrase7e-46184
AC_000091:1191353:1201256120125612023831128Escherichia coli W3110 DNA, complete genomepredicted integrase4e-45182
NC_000913:1188999:1198902119890212000291128Escherichia coli K12, complete genomee14 prophage; predicted integrase4e-45182
NC_011751:1405381:1411252141125214123941143Escherichia coli UMN026 chromosome, complete genomephage integrase1e-44180
NC_008563:1175035:1178855117885511799971143Escherichia coli APEC O1, complete genomeprophage lambda integrase3e-44179
NC_007946:1239278:1241467124146712426091143Escherichia coli UTI89, complete genomeprophage lambda integrase3e-44179
NC_011742:1177946:1182443118244311835851143Escherichia coli S88 chromosome, complete genomephage integrase3e-44179
NC_014562:983398:9899719899719911161146Pantoea vagans C9-1 chromosome, complete genomeIntegrase3e-44179
NC_016856:1957263:196927919692791969608330Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-44179
NC_016857:1903426:191544219154421915771330Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein2e-44179
NC_017046:1902788:191480419148041915133330Salmonella enterica subsp. enterica serovar Typhimurium str. 7982e-44179
NC_007712:1791766:179714417971441797914771Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase3e-43176
NC_011149:1236689:123668912366891237048360Salmonella enterica subsp. enterica serovar Agona str. SL483,integrase3e-43176
NC_012125:1897611:191861119186111918940330Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein3e-43176
NC_012731:2083650:2089612208961220907541143Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeprophage lambda integrase5e-43175
NC_013282:1804909:1812665181266518138131149Cronobacter turicensis, complete genomeProphage lambda integrase1e-42174
NC_011283:2836000:2907727290772729088661140Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase4e-42172
NC_014838:218000:2249612249612261031143Pantoea sp. At-9b plasmid pPAT9B01, complete sequencelambda integrase6e-42171
NC_007650:1192310:1197986119798611991131128Burkholderia thailandensis E264 chromosome II, complete sequenceintegrase-like protein4e-41169
NC_016612:3803130:3809103380910338102301128Klebsiella oxytoca KCTC 1686 chromosome, complete genomesite-specific recombinase, phage integrase family protein1e-40167
NC_009801:1392696:1417903141790314190331131Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family5e-39162
NC_006511:1063249:107544410754441075773330Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage integrase protein3e-39162
NC_011147:1057259:106945410694541069783330Salmonella enterica subsp. enterica serovar Paratyphi A str3e-39162
CU928145:1408280:1408280140828014094101131Escherichia coli 55989 chromosome, complete genomephage integrase3e-38159
NC_011748:1408280:1408280140828014094101131Escherichia coli 55989, complete genomephage integrase3e-38159
NC_013364:1997891:1998117199811719992471131Escherichia coli O111:H- str. 11128, complete genomeputative integrase3e-38159
NC_011353:1716037:1737316173731617384461131Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family1e-37157
NC_013008:1715831:1736291173629117374211131Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase for prophage CP-933O1e-37157
NC_009832:2211154:222325822232582224040783Serratia proteamaculans 568, complete genomeintegrase family protein4e-36152
NC_016832:1090274:109188310918831092152270Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Phage integrase1e-33144
NC_012125:1897611:190945919094591909728270Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein2e-33143
NC_012791:2590500:2590574259057425916621089Variovorax paradoxus S110 chromosome 1, complete genomeintegrase family protein6e-33141
NC_016831:1690811:171438817143881714657270Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-33141
NC_020418:2910593:291768229176822918563882Morganella morganii subsp. morganii KT, complete genomePhage integrase1e-30134
NC_013364:1997891:201108120110812011473393Escherichia coli O111:H- str. 11128, complete genome3e-26119
NC_004631:1091303:109293910929391093139201Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-25115
NC_003198:1867456:188799318879931888193201Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-25115
NC_011770:2499432:2540392254039225415041113Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative7e-24111
NC_011740:1831845:184836618483661848854489Escherichia fergusonii ATCC 35469, complete genome2e-23110
NC_011294:1220526:125758412575841257943360Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-22106
NC_010102:1137247:116150011615001161820321Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-1892.4
NC_017506:2089769:2107666210766621087871122Marinobacter adhaerens HP15 chromosome, complete genomeprophage lambda integrase1e-1584
NC_015379:4691868:470798047079804708960981Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative integrase4e-1375.9
NC_009778:959982:9698359698359710191185Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1375.9
NC_020418:2868000:287747828774782877876399Morganella morganii subsp. morganii KT, complete genomePhage integrase5e-1375.5
NC_007974:1007834:102021810202181020673456Ralstonia metallidurans CH34 chromosome 2, complete sequencephage integrase1e-1067.8
NC_007645:4677965:469104446910444691523480Hahella chejuensis KCTC 2396, complete genomeIntegrase1e-1067.8
NC_015566:3659318:3669051366905136702291179Serratia sp. AS12 chromosome, complete genomehypothetical protein3e-1066.2
NC_013508:1687432:169951816995181699856339Edwardsiella tarda EIB202, complete genomeputative phage integrase protein3e-0963.2
NC_006512:728281:7344067344067355571152Idiomarina loihiensis L2TR, complete genomeIntegrase1e-0861.2
NC_012947:3015985:303373730337373033898162Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete2e-0757
NC_016816:2953530:2977372297737229783941023Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family3e-0653.1
NC_015942:403296:4159944159944170011008Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase family protein8e-0651.6