Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011742: Escherichia coli S88 chromosome, complete genome

NCBI: NC_011742

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli S88 is a serotype O45:K1 strain isolated from a case of neonatal meningitis. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1149732*17320723476Island text1.5562732.137628.7794Neighbours41BLASTN+149732.gbk
225874628282524080Island text2.0157834.975237.9163Neighbours41BLASTN+IslandViewer 258746.gbk
3291237*33041339177Island text1.6722832.631724.4284Neighbours41BLASTN+IslandViewer 291237.gbk
458590860759921692Island text1.5048838.82837.1184Neighbours51BLASTN+IslandViewer 585908.gbk
51177946*120061722672Island text1.6810731.872433.1928Neighbours41BLASTN+IslandViewer 1177946.gbk
61221416124722625811Island text2.4623935.59819.4334Neighbours41BLASTN+IslandViewer 1221416.gbk
71528668155331524648Island text1.5041530.86744.0431Neighbours41BLASTN+IslandViewer 1528668.gbk
81574036159797723942Island text2.0209231.324521.6951Neighbours41BLASTN+IslandViewer 1574036.gbk
92002526*202909926574Island text1.5955935.503624.1199Neighbours51BLASTN+2002526.gbk
102093503212148227980Island text3.288339.616426.0574Neighbours41BLASTNIslandViewer 2093503.gbk
112489000251223323234Island text1.798933.438226.0075Neighbours42BLASTN+IslandViewer 2489000.gbk
122533500255359920100Island text2.277830.942522.0632Neighbours41BLASTN+IslandViewer 2533500.gbk
132823000284560522606Island text1.5275842.941454.8666Neighbours41BLASTN+2823000.gbk
142863316288609922784Island text1.9082429.763524.1138Neighbours41BLASTN+IslandViewer 2863316.gbk
153057444308119923756Island text1.8850433.88721.4166Neighbours41BLASTNIslandViewer 3057444.gbk
163245500326620020701Island text1.629130.909531.3619Neighbours41BLASTN+IslandViewer 3245500.gbk
173277941330570527765Island text1.5484935.012228.1633Neighbours41BLASTN+IslandViewer 3277941.gbk
183758618378457525958Island text4.0942742.938719.4731Neighbours41BLASTNIslandViewer 3758618.gbk
193799788*382250622719Island text2.0665634.93323.8223Neighbours41BLASTN+IslandViewer 3799788.gbk
203998285*402181923535Island text1.8378830.41417.2494Neighbours41BLASTNIslandViewer 3998285.gbk
214569683459257522893Island text2.5718235.524116.2505Neighbours41BLASTN+4569683.gbk
224655373467665321281Island text1.4907134.30226.3309Neighbours41BLASTN+IslandViewer 4655373.gbk
234795733*481943423702Island text1.5798939.166927.4374Neighbours41BLASTN+IslandViewer 4795733.gbk
244873351489559922249Island text1.6381331.712120.8064Neighbours41BLASTN+IslandViewer 4873351.gbk
254962008498932827321Island text2.110832.461124.0603Neighbours51BLASTN+IslandViewer 4962008.gbk