Pre_GI: BLASTN Hits

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Query: NC_011742:1177946 Escherichia coli S88 chromosome, complete genome

Start: 1177946, End: 1200617, Length: 22672

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli S88 is a serotype O45:K1 strain isolated from a case of neonatal meningitis. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome028510BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome025320BLASTN svgBLASTP svg
NC_004431:14016811401681142114919469Escherichia coli CFT073, complete genome016270BLASTN svgBLASTP svg
NC_011751:1405381*1405381142709921719Escherichia coli UMN026 chromosome, complete genome011450BLASTN svgBLASTP svg
NC_010498:1995500*1995500202472729228Escherichia coli SMS-3-5, complete genome08032BLASTN svgBLASTP svg
NC_010473:1245284*1245284127191826635Escherichia coli str. K-12 substr. DH10B, complete genome07969BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome07969BLASTN svgBLASTP svg
CP002185:1298675*1298675132326124587Escherichia coli W, complete genome07961BLASTN svgBLASTP svg
CP002516:2786000*2786000281204426045Escherichia coli KO11, complete genome07961BLASTN svgBLASTP svg
NC_010468:2699000*2699000272285223853Escherichia coli ATCC 8739, complete genome07961BLASTN svgBLASTP svg
NC_009801:1296488*1296488132313526648Escherichia coli E24377A, complete genome07945BLASTN svgBLASTP svg
CU928160:1232510*1232510125609923590Escherichia coli IAI1 chromosome, complete genome07937BLASTN svgBLASTP svg
NC_011748:1300863*1300863132330622444Escherichia coli 55989, complete genome07890BLASTN svgBLASTP svg
CU928145:1300863*1300863132330622444Escherichia coli 55989 chromosome, complete genome07890BLASTN svgBLASTP svg
AP010958:1339263*1339263136273323471Escherichia coli O103:H2 str. 12009 DNA, complete genome07890BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome07834BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome07834BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome07795BLASTN svgBLASTP svg
NC_002655:13329611332961135150618546Escherichia coli O157:H7 EDL933, complete genome06282BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome06236BLASTN svgBLASTP svg
NC_011748:82436782436784378119415Escherichia coli 55989, complete genome05697BLASTN svgBLASTP svg
CU928145:82436782436784378119415Escherichia coli 55989 chromosome, complete genome05697BLASTN svgBLASTP svg
AP010958:5361207*5361207538029819092Escherichia coli O103:H2 str. 12009 DNA, complete genome05333BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome04010BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome04010BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome04010BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome04010BLASTN svgBLASTP svg
NC_011740:18318451831845185021818374Escherichia fergusonii ATCC 35469, complete genome03461BLASTN svgBLASTP svg
NC_009792:17399701739970176500625037Citrobacter koseri ATCC BAA-895, complete genome03386BLASTN svgBLASTP svg
NC_011740:27699612769961278959919639Escherichia fergusonii ATCC 35469, complete genome02230BLASTN svgBLASTP svg
NC_008563:14755001475500149389218393Escherichia coli APEC O1, complete genome01826BLASTN svgBLASTP svg
NC_011083:1323827*1323827134240718581Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01447BLASTN svgBLASTP svg
NC_011080:1321268*1321268133914217875Salmonella enterica subsp. enterica serovar Newport str. SL254,01447BLASTN svgBLASTP svg
NC_011149:1870931*1870931190072529795Salmonella enterica subsp. enterica serovar Agona str. SL483,01445BLASTN svgBLASTP svg
NC_003197:1320861*1320861134738426524Salmonella typhimurium LT2, complete genome01429BLASTN svgBLASTP svg
NC_013850:3340882*3340882337329232411Klebsiella variicola At-22 chromosome, complete genome01285BLASTN svgBLASTP svg
NC_014121:2514544*2514544255659942056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01277BLASTN svgBLASTP svg
NC_013282:1804909*1804909182709922191Cronobacter turicensis, complete genome01166BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome01096BLASTN svgBLASTP svg
NC_015567:2125415*2125415214809922685Serratia sp. AS9 chromosome, complete genome0987BLASTN svgBLASTP svg
NC_015566:2125403*2125403214809922697Serratia sp. AS12 chromosome, complete genome0987BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0979BLASTN svgBLASTP svg
NC_009832:2211154*2211154224619035037Serratia proteamaculans 568, complete genome0979BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome0975BLASTN svgBLASTP svg
NC_011740:20721732072173211413741965Escherichia fergusonii ATCC 35469, complete genome0965BLASTN svgBLASTP svg
NC_020064:1962172*1962172199309930928Serratia marcescens FGI94, complete genome0908BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str0908BLASTN svgBLASTP svg
NC_006511:25015002501500252217820679Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC0900BLASTN svgBLASTP svg
NC_014562:983398*983398101509931702Pantoea vagans C9-1 chromosome, complete genome0890BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome0868BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome0868BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome0848BLASTN svgBLASTP svg
NC_007946:26254612625461264923523775Escherichia coli UTI89, complete genome0795BLASTN svgBLASTP svg
NC_015061:3147691*3147691317026522575Rahnella sp. Y9602 chromosome, complete genome0759BLASTN svgBLASTP svg
NC_012912:2216749*2216749224082124073Dickeya zeae Ech1591, complete genome0743BLASTN svgBLASTP svg
AC_000091:1407693*1407693143069823006Escherichia coli W3110 DNA, complete genome0654BLASTN svgBLASTP svg
NC_000913:1404000*1404000142700823009Escherichia coli K12, complete genome0654BLASTN svgBLASTP svg
NC_010473:1493983*1493983151640422422Escherichia coli str. K-12 substr. DH10B, complete genome0654BLASTN svgBLASTP svg
NC_011748:1773642*1773642179521821577Escherichia coli 55989, complete genome9e-176624BLASTN svgBLASTP svg
CU928145:1773642*1773642179521821577Escherichia coli 55989 chromosome, complete genome9e-176624BLASTN svgBLASTP svg
NC_010694:2189652*2189652221918829537Erwinia tasmaniensis, complete genome2e-173617BLASTN svgBLASTP svg
NC_014500:2589089*2589089260812419036Dickeya dadantii 3937 chromosome, complete genome1e-168601BLASTN svgBLASTP svg
NC_013716:12989321298932132714328212Citrobacter rodentium ICC168, complete genome2e-139504BLASTN svgBLASTP svg
NC_012880:2425330*2425330245003424705Dickeya dadantii Ech703, complete genome9e-139502BLASTN svgBLASTP svg
NC_011740:1991941*1991941201386221922Escherichia fergusonii ATCC 35469, complete genome2e-130474BLASTN svgBLASTP svg
AP010958:2911741*2911741294759935859Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-122448BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome2e-99371BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome5e-97363BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome5e-97363BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome3e-95357BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome3e-92347BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome5e-88333BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome5e-88333BLASTN svgBLASTP svg
CU928145:1408280*1408280143235524076Escherichia coli 55989 chromosome, complete genome1e-66262BLASTN svgBLASTP svg
NC_011748:1408280*1408280143235524076Escherichia coli 55989, complete genome1e-66262BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete8e-59236BLASTN svgBLASTP svg
NC_002695:1929215*1929215195011620902Escherichia coli O157:H7 str. Sakai, complete genome5e-57230BLASTN svgBLASTP svg
NC_008258:18738051873805189655222748Shigella flexneri 5 str. 8401, complete genome1e-54222BLASTN svgBLASTP svg
AC_000091:16270491627049165562928581Escherichia coli W3110 DNA, complete genome1e-48202BLASTN svgBLASTP svg
CP002185:17708151770815179359922785Escherichia coli W, complete genome1e-48202BLASTN svgBLASTP svg
CP002516:2305659*2305659232825322595Escherichia coli KO11, complete genome1e-48202BLASTN svgBLASTP svg
CU928160:16688421668842169164522804Escherichia coli IAI1 chromosome, complete genome1e-48202BLASTN svgBLASTP svg
NC_000913:1625500*1625500165193926440Escherichia coli K12, complete genome1e-48202BLASTN svgBLASTP svg
NC_010468:2265423*2265423228519619774Escherichia coli ATCC 8739, complete genome1e-48202BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome1e-48202BLASTN svgBLASTP svg
NC_011750:15650001565000158659921600Escherichia coli IAI39 chromosome, complete genome1e-48202BLASTN svgBLASTP svg
NC_011751:18596061859606188482925224Escherichia coli UMN026 chromosome, complete genome1e-48202BLASTN svgBLASTP svg
NC_011740:45203734520373454479624424Escherichia fergusonii ATCC 35469, complete genome4e-45190BLASTN svgBLASTP svg
NC_008563:50119975011997503931827322Escherichia coli APEC O1, complete genome4e-45190BLASTN svgBLASTP svg
NC_004431:30409533040953306393422982Escherichia coli CFT073, complete genome4e-45190BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome2e-44188BLASTN svgBLASTP svg
NC_015663:47674434767443479659929157Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-44186BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome3e-43184BLASTN svgBLASTP svg
NC_013282:18424121842412187000127590Cronobacter turicensis, complete genome1e-39172BLASTN svgBLASTP svg
NC_015663:45221094522109454904226934Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-33151BLASTN svgBLASTP svg
NC_010102:17797071779707181158331877Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-32147BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str6e-32147BLASTN svgBLASTP svg
NC_010554:10084441008444102773319290Proteus mirabilis HI4320, complete genome8e-25123BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome5e-23117BLASTN svgBLASTP svg
NC_012560:2906459*2906459292809921641Azotobacter vinelandii DJ, complete genome2e-22115BLASTN svgBLASTP svg
NC_021150:2906471*2906471292809921629Azotobacter vinelandii CA6, complete genome2e-22115BLASTN svgBLASTP svg
NC_012779:21849272184927220656121635Edwardsiella ictaluri 93-146, complete genome1e-20109BLASTN svgBLASTP svg
NC_007712:1791766*1791766181730825543Sodalis glossinidius str. 'morsitans', complete genome2e-19105BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,8e-19103BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-19103BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome8e-19103BLASTN svgBLASTP svg
NC_002655:20150002015000203595420955Escherichia coli O157:H7 EDL933, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004741:18230001823000184104318044Shigella flexneri 2a str. 2457T, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010498:17004471700447171902918583Escherichia coli SMS-3-5, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_011750:18099431809943183281122869Escherichia coli IAI39 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008258:17846371784637180559020954Shigella flexneri 5 str. 8401, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014121:36275883627588367459947012Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-1179.8BLASTN svgBLASTP svg
NC_020260:3004500*3004500302796523466Cronobacter sakazakii Sp291, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete7e-1073.8BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003295:26694802669480269721727738Ralstonia solanacearum GMI1000, complete genome7e-1073.8BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome3e-0971.9BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_000913:2028472*2028472205003821567Escherichia coli K12, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002655:27306592730659276187131213Escherichia coli O157:H7 EDL933, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002695:26554452655445267786922425Escherichia coli O157:H7 str. Sakai, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008340:27722327722330180624584Alkalilimnicola ehrlichei MLHE-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009778:29932182993218302409930882Enterobacter sakazakii ATCC BAA-894, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013282:12009931200993124927948287Cronobacter turicensis, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013716:2139952*2139952219678356832Citrobacter rodentium ICC168, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_015062:999699996912011920151Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_015663:4906652*4906652493024623595Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013961:2370994*2370994240176230769Erwinia amylovora, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008820:22689002268900229243723538Prochlorococcus marinus str. MIT 9303, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007712:12199571219957125505635100Sodalis glossinidius str. 'morsitans', complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009648:1541699*1541699160010958411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009648:293052*29305232674733696Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010995:2855595*2855595294415488560Cellvibrio japonicus Ueda107, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008563:15054051505405154006134657Escherichia coli APEC O1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg