Pre_GI: BLASTN Hits

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Query: NC_011742:3799788 Escherichia coli S88 chromosome, complete genome

Start: 3799788, End: 3822506, Length: 22719

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli S88 is a serotype O45:K1 strain isolated from a case of neonatal meningitis. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome038330BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome020440BLASTN svgBLASTP svg
NC_012779:3570720*3570720359409923380Edwardsiella ictaluri 93-146, complete genome5e-174618BLASTN svgBLASTP svg
NC_015224:27903727903730366824632Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-42180BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome5e-26127BLASTN svgBLASTP svg
NC_015556:819503*81950384290123399Pseudomonas fulva 12-X chromosome, complete genome2e-25125BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome5e-23117BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome1e-20109BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome1e-20109BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome1e-20109BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome1e-20109BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome8e-19103BLASTN svgBLASTP svg
NC_008702:40644704064470409211327644Azoarcus sp. BH72, complete genome3e-18101BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008543:20352922035292205318117890Burkholderia cenocepacia HI2424 chromosome 2, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_008061:42850142850144790319403Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_021066:1393750*1393750141908425335Raoultella ornithinolytica B6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010552:20891402089140211228223143Burkholderia ambifaria MC40-6 chromosome 2, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_007511:71949371949373920719715Burkholderia sp. 383 chromosome 2, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010515:23581342358134238144223309Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_005773:69499069499072559930610Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome2e-1385.7BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome7e-1383.8BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-1383.8BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome7e-1383.8BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome7e-1383.8BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014366:2393702*2393702241689423193Gamma proteobacterium HdN1, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007645:1245927*1245927126577919853Hahella chejuensis KCTC 2396, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome7e-1073.8BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome7e-1073.8BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome7e-1073.8BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-1073.8BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome2e-0765.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0765.9BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007606:38427083842708386376421057Shigella dysenteriae Sd197, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete2e-0765.9BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete2e-0765.9BLASTN svgBLASTP svg
NC_010557:67965667965674320963554Burkholderia ambifaria MC40-6 chromosome 3, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010498:46567164656716467519018475Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008785:91441191441194029125881Burkholderia mallei SAVP1 chromosome II, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004431:17131411713141173884125701Escherichia coli CFT073, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002655:20150002015000203595420955Escherichia coli O157:H7 EDL933, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_000913:15170511517051154061423564Escherichia coli K12, complete genome7e-0763.9BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome7e-0763.9BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome7e-0763.9BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
AC_000091:15219761521976154430422329Escherichia coli W3110 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007946:15866561586656161278726132Escherichia coli UTI89, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013960:2261487*2261487228382522339Nitrosococcus halophilus Nc4 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010473:16076461607646163120923564Escherichia coli str. K-12 substr. DH10B, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008563:15778791577879160172323845Escherichia coli APEC O1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008563:28713628713630584318708Escherichia coli APEC O1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006905:848000*84800086575317754Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0661.9BLASTN svgBLASTP svg
NC_003197:815964*81596483952123558Salmonella typhimurium LT2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002937:61400061400064122427225Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete3e-0661.9BLASTN svgBLASTP svg
NC_008751:27740002774000279735623357Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010102:2287934*2287934231106023127Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-0661.9BLASTN svgBLASTP svg
NC_010498:41669034166903419347126569Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011080:819103*81910384387224770Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-0661.9BLASTN svgBLASTP svg
NC_011083:862901*86290188778924889Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-0661.9BLASTN svgBLASTP svg
NC_011149:779903*77990380318023278Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-0661.9BLASTN svgBLASTP svg
NC_011740:14947961494796152042525630Escherichia fergusonii ATCC 35469, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011750:44905734490573451714226570Escherichia coli IAI39 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
AP010958:92293792293795098628050Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg