Pre_GI: BLASTN Hits

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Query: NC_011742:258746 Escherichia coli S88 chromosome, complete genome

Start: 258746, End: 282825, Length: 24080

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli S88 is a serotype O45:K1 strain isolated from a case of neonatal meningitis. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome047360BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome047360BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome045590BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome013930BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome011620BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome08324BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome06930BLASTN svgBLASTP svg
NC_020063:2785652*2785652280843522784Enterobacteriaceae bacterium strain FGI 57, complete genome02686BLASTN svgBLASTP svg
NC_008563:15778791577879160172323845Escherichia coli APEC O1, complete genome02674BLASTN svgBLASTP svg
NC_007946:15866561586656161278726132Escherichia coli UTI89, complete genome02674BLASTN svgBLASTP svg
NC_004431:17131411713141173884125701Escherichia coli CFT073, complete genome02579BLASTN svgBLASTP svg
NC_011751:17141311714131174129427164Escherichia coli UMN026 chromosome, complete genome02405BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete02157BLASTN svgBLASTP svg
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC02117BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,01978BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,01970BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome01970BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01947BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,01939BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome01441BLASTN svgBLASTP svg
NC_011740:14947961494796152042525630Escherichia fergusonii ATCC 35469, complete genome0731BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome0729BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome0729BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome0714BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome0706BLASTN svgBLASTP svg
NC_020260:3004500*3004500302796523466Cronobacter sakazakii Sp291, complete genome0698BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome0692BLASTN svgBLASTP svg
NC_010473:16076461607646163120923564Escherichia coli str. K-12 substr. DH10B, complete genome0682BLASTN svgBLASTP svg
NC_000913:15170511517051154061423564Escherichia coli K12, complete genome0682BLASTN svgBLASTP svg
AC_000091:15219761521976154430422329Escherichia coli W3110 DNA, complete genome0682BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome0658BLASTN svgBLASTP svg
AP010958:60471960471962691322195Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-169603BLASTN svgBLASTP svg
NC_011751:68041768041770234121925Escherichia coli UMN026 chromosome, complete genome2e-155557BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-136494BLASTN svgBLASTP svg
NC_020063:20772332077233210134824116Enterobacteriaceae bacterium strain FGI 57, complete genome7e-115422BLASTN svgBLASTP svg
NC_020063:33525163352516337629223777Enterobacteriaceae bacterium strain FGI 57, complete genome2e-112414BLASTN svgBLASTP svg
NC_020063:31040003104000312597921980Enterobacteriaceae bacterium strain FGI 57, complete genome1e-97365BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome3e-49204BLASTN svgBLASTP svg
NC_013716:37084153708415373077822364Citrobacter rodentium ICC168, complete genome7e-47196BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome2e-44188BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome2e-44188BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome7e-44186BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome3e-43184BLASTN svgBLASTP svg
NC_014500:89413689413693546441329Dickeya dadantii 3937 chromosome, complete genome4e-42180BLASTN svgBLASTP svg
NC_014532:35960973596097363859942503Halomonas elongata DSM 2581, complete genome4e-39170BLASTN svgBLASTP svg
NC_013421:57961579617736519405Pectobacterium wasabiae WPP163, complete genome1e-36163BLASTN svgBLASTP svg
NC_004547:3866439*3866439389314026702Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-34155BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome4e-33151BLASTN svgBLASTP svg
NC_011740:29865142986514300959323080Escherichia fergusonii ATCC 35469, complete genome1e-26129BLASTN svgBLASTP svg
NC_008149:65070665070667964628941Yersinia pestis Nepal516, complete genome2e-25125BLASTN svgBLASTP svg
NC_005810:33330003333000336198528986Yersinia pestis biovar Microtus str. 91001, complete genome2e-25125BLASTN svgBLASTP svg
NC_003143:74116974116977078329615Yersinia pestis CO92, complete genome2e-25125BLASTN svgBLASTP svg
NC_009792:4017510*4017510404823430725Citrobacter koseri ATCC BAA-895, complete genome9e-25123BLASTN svgBLASTP svg
NC_015968:4117835*4117835416711149277Enterobacter asburiae LF7a chromosome, complete genome6e-23117BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome6e-23117BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome2e-22115BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome2e-22115BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome2e-22115BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome2e-22115BLASTN svgBLASTP svg
NC_009792:26887472688747271473325987Citrobacter koseri ATCC BAA-895, complete genome9e-22113BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome5e-20107BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome3e-18101BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome3e-18101BLASTN svgBLASTP svg
NC_009052:2683447*2683447270509921653Shewanella baltica OS155, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013416:668152*66815269868530534Aggregatibacter actinomycetemcomitans D11S-1, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015663:41296854129685415207222388Enterobacter aerogenes KCTC 2190 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013421:55319355319358079227600Pectobacterium wasabiae WPP163, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome1e-1489.7BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010002:66169666169668889327198Delftia acidovorans SPH-1, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_015563:60678360678362671319931Delftia sp. Cs1-4 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome2e-1385.7BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_002505:15078601507860152884320984Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete3e-1281.8BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008563:28713628713630584318708Escherichia coli APEC O1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010498:41669034166903419347126569Escherichia coli SMS-3-5, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011750:44905734490573451714226570Escherichia coli IAI39 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_012559:73185973185975630324445Laribacter hongkongensis HLHK9, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013508:1289159*1289159133392244764Edwardsiella tarda EIB202, complete genome7e-1073.8BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010468:1694729*1694729171759922871Escherichia coli ATCC 8739, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010512:86693286693289209925168Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_013851:33002783300278332129021013Allochromatium vinosum DSM 180 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020911:2921925*2921925299019968275Octadecabacter antarcticus 307, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome1e-0869.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007492:17355951735595175753521941Pseudomonas fluorescens PfO-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002695:46789454678945470459925655Escherichia coli O157:H7 str. Sakai, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_002655:47479264747926477356525640Escherichia coli O157:H7 EDL933, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome5e-0867.9BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome5e-0867.9BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome5e-0867.9BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome5e-0867.9BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome5e-0867.9BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015422:4395388*4395388441939024003Alicycliphilus denitrificans K601 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014910:4026613*4026613405112124509Alicycliphilus denitrificans BC chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013421:11435001143500116948625987Pectobacterium wasabiae WPP163, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011149:31870223187022321200624985Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-0867.9BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008576:44677454467745449464126897Magnetococcus sp. MC-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011751:43739614373961440053726577Escherichia coli UMN026 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015138:21101492110149213484224694Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete7e-0763.9BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002655:20150002015000203595420955Escherichia coli O157:H7 EDL933, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007606:38427083842708386376421057Shigella dysenteriae Sd197, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008346:983816*983816100718823373Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete3e-0661.9BLASTN svgBLASTP svg
NC_009800:28899282889928291209922172Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010498:46567164656716467519018475Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013194:3984377*3984377400260218226Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete3e-0661.9BLASTN svgBLASTP svg
NC_015138:49059354905935493092624992Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg