Pre_GI Gene

Some Help

Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3280039 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3280039328113010923-isopropylmalate dehydrogenaseQuickGO ontologyBLASTP
328125032822871038Holliday junction DNA helicase RuvBQuickGO ontologyBLASTP
32823323282940609Holliday junction DNA helicase RuvAQuickGO ontologyBLASTP
328322532835363123-dehydroquinate dehydrataseQuickGO ontologyBLASTP
328371132849731263DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
32849763285596621undecaprenyl-phosphate galactose phosphotransferaseQuickGO ontologyBLASTP
328555932865039451-aminocyclopropane-1-carboxylate deaminaseQuickGO ontologyBLASTP
32865073287466960carbamoyl phosphate synthase-like proteinQuickGO ontologyBLASTP
328746732885731107group 1 glycosyl transferaseQuickGO ontologyBLASTP
328857032896101041group 1 glycosyl transferaseQuickGO ontologyBLASTP
328959732907931197hypothetical protein
329079932919531155group 1 glycosyl transferaseQuickGO ontologyBLASTP
32919733292935963family 2 glycosyl transferaseQuickGO ontologyBLASTP
329297832939881011hypothetical proteinBLASTP
329398932945405524Fe-4S ferredoxinQuickGO ontologyBLASTP
329459132956221032family 2 glycosyl transferaseQuickGO ontologyBLASTP
32958503296824975D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding proteinQuickGO ontologyBLASTP
329678732977881002hypothetical proteinBLASTP
32977953298640846Fe-S type tartratefumarate subfamily hydro-lyase subunit alphaQuickGO ontologyBLASTP
329865832997401083hypothetical proteinBLASTP
32997423300245504Fe-S type hydro-lyase tartratefumarate beta regionQuickGO ontologyBLASTP
330024233015791338MmgEPrpD family proteinQuickGO ontologyBLASTP
330167233027691098capsule synthesis protein CapAQuickGO ontologyBLASTP
330276633038691104hypothetical proteinBLASTP
330390033050331134hypothetical proteinBLASTP
330504533062861242phosphoribosylglycinamide synthetaseQuickGO ontologyBLASTP
33063093307208900peptidaseQuickGO ontologyBLASTP
330722733083421116DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
330837933098211443polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
33098463310064219hypothetical protein
331009633119581863hypothetical proteinBLASTP
331201433130241011hypothetical proteinBLASTP
33130313313846816group 1 glycosyl transferaseQuickGO ontologyBLASTP
331400533150811077hypothetical proteinBLASTP
331508133160971017hypothetical proteinBLASTP
33161023317058957family 2 glycosyl transferaseQuickGO ontologyBLASTP
33171233318106984group 1 glycosyl transferaseQuickGO ontologyBLASTP
331811233192421131UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
33192673320121855dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
332013433211741041UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
332117533224041230group 1 glycosyl transferaseQuickGO ontologyBLASTP
33224073323285879NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
33232823323917636sugar transferaseQuickGO ontologyBLASTP
33239103324428519PglB proteinQuickGO ontologyBLASTP
33246533324958306hypothetical protein
33249523325167216hypothetical protein
332540133289823582hypothetical protein
33290793329684606hypothetical proteinBLASTP
332968133309641284SMC domain-containing proteinQuickGO ontologyBLASTP
333125833322771020UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
333227733334821206NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
333348233346661185UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
33350513335350300hypothetical proteinBLASTP
33355053336068564hypothetical proteinBLASTP
33360683336559492hypothetical protein
33366703336843174hypothetical protein
33370583337600543hypothetical proteinBLASTP
33376033338010408hypothetical protein
33382523338470219hypothetical protein
333859633407852190hypothetical proteinBLASTP