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Query: NC_013410:3280039:3317123 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3317123, End: 3318106, Length: 984

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010067:807129:8164358164358175291095Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-30134
NC_012759:1983975:1993898199389819950161119Escherichia coli BW2952 chromosome, complete genomelipopolysaccharide biosynthesis protein7e-30131
AC_000091:2096672:2105528210552821066461119Escherichia coli W3110 DNA, complete genomelipopolysaccharide biosynthesis protein7e-30131
NC_010473:2183567:2192423219242321935411119Escherichia coli str. K-12 substr. DH10B, complete genomelipopolysaccharide biosynthesis protein7e-30131
NC_000913:2092559:2101415210141521025331119Escherichia coli K12, complete genomelipopolysaccharide biosynthesis protein7e-30131
NC_007908:1328832:1353266135326613543811116Rhodoferax ferrireducens T118, complete genomeglycosyl transferase, group 11e-29130
NC_015572:1252000:1293914129391412950381125Methylomonas methanica MC09 chromosome, complete genomegroup 1 glycosyl transferase6e-29128
NC_013199:2058857:2074089207408920751681080Lactobacillus rhamnosus Lc 705, complete genomeglycosyltransferase (WelG)1e-27124
NC_015500:2112975:2127417212741721285861170Treponema brennaborense DSM 12168 chromosome, complete genomeglycosyl transferase group 14e-27122
NC_011753:206178:2205122205122216271116Vibrio splendidus LGP32 chromosome 1, complete genomeputative glycosyl transferase2e-25117
NC_004663:44647:5001150011511321122Bacteroides thetaiotaomicron VPI-5482, complete genomeputative glycosyltransferase1e-23110
NC_015578:61820:8014680146812491104Treponema primitia ZAS-2 chromosome, complete genomeWfbF1e-22107
NC_014033:103020:1236321236321247351104Prevotella ruminicola 23 chromosome, complete genomehypothetical protein9e-1374.7
NC_005139:343500:3563413563413574231083Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein6e-0962
NC_010814:2074266:2079111207911120802591149Geobacter lovleyi SZ, complete genomeglycosyl transferase group 15e-0858.9
NC_007958:830000:8464368464368474701035Rhodopseudomonas palustris BisB5, complete genomeglycosyl transferase, group 12e-0757.4
NC_015160:3585354:3600363360036336013671005Odoribacter splanchnicus DSM 20712 chromosome, complete genomeglycosyl transferase group 12e-0757
NC_009483:1936486:1952899195289919540561158Geobacter uraniireducens Rf4 chromosome, complete genomegroup 1 glycosyl transferase3e-0756.2
NC_007759:2315490:2324970232497023261631194Syntrophus aciditrophicus SB, complete genomemannosyltransferase5e-0755.5