Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3286507 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3286507, End: 3287466, Length: 960

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009615:487173:496348496348497325978Parabacteroides distasonis ATCC 8503 chromosome, complete genomecarbamoyl phosphate synthase-like protein9e-123439
NC_017068:2827568:2842424284242428434281005Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein3e-69262
NC_014370:1117283:112270811227081123697990Prevotella melaninogenica ATCC 25845 chromosome chromosome I,ATP-grasp domain protein1e-59230
NC_007644:779376:789606789606790586981Moorella thermoacetica ATCC 39073, complete genomeProtein of unknown function DUF2016e-45181
NC_015573:1729057:173940917394091740383975Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeATP-grasp fold domain-containing protein1e-43177
NC_012793:3275751:328201832820183283001984Geobacillus sp. WCH70, complete genomeprotein of unknown function DUF2012e-39163
NC_010674:828191:842046842046842993948Clostridium botulinum B str. Eklund 17B, complete genomedomain of unknown function family6e-31134
NC_010723:801215:819262819262820209948Clostridium botulinum E3 str. Alaska E43, complete genomedomain of unknown function family2e-30133
NC_020291:4944835:4979620497962049806541035Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomecarbamoylphosphate synthase large subunit7e-30131
NC_014220:170021:187873187873188853981Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeprotein of unknown function DUF2017e-29128
NC_010424:1857062:186517418651741866112939Candidatus Desulforudis audaxviator MP104C, complete genomeprotein of unknown function DUF2016e-28125
NC_015160:136055:141918141918142904987Odoribacter splanchnicus DSM 20712 chromosome, complete genomeATP-grasp fold domain-containing protein8e-25114
NC_004603:230000:244604244604245569966Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein3e-23109
NC_012791:2052923:206950820695082070482975Variovorax paradoxus S110 chromosome 1, complete genomeprotein of unknown function DUF2015e-22105
NC_013235:5849659:5868454586845458695451092Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF2015e-21102
NC_018876:2277160:227888522788852279883999Methanolobus psychrophilus R15 chromosome, complete genomeCarB protein3e-2099.4
NC_002927:118982:1291771291771302471071Bordetella bronchiseptica RB50, complete genomehypothetical protein3e-1789.4
NC_009802:1525144:1543593154359315446031011Campylobacter concisus 13826, complete genomesodium-dependent transporter3e-1686.3
NC_009659:2523874:2544612254461225456641053Janthinobacterium sp. Marseille chromosome, complete genomecarbamoyl phosphate synthase-like protein3e-1685.9
NC_012881:4055962:4063805406380540648061002Desulfovibrio salexigens DSM 2638, complete genomeprotein of unknown function DUF2012e-1480.1
NC_017068:1852708:1896375189637518974391065Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein5e-1479
NC_020210:3169258:317993031799303180898969Geobacillus sp. GHH01, complete genomeATP-grasp domain-containing protein2e-1273.6
NC_014915:3259440:326681532668153267783969Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF2013e-1272.8
NC_013411:3251500:326084632608463261814969Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF2013e-1272.8
NC_016112:806256:821505821505822446942Methylomicrobium alcaliphilum chromosome, complete genomeATP-dependent carboligase6e-1272
NC_014151:813755:835238835238835777540Cellulomonas flavigena DSM 20109 chromosome, complete genome7e-1271.6
NC_014650:376070:392058392058392975918Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein6e-1271.6
NC_015160:1117371:1121740112174011228041065Odoribacter splanchnicus DSM 20712 chromosome, complete genomeATP-grasp fold domain-containing protein1e-1170.9
NC_017068:2827568:284212628421262842347222Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein4e-1065.9
NC_011026:2533017:2547702254770225497352034Chloroherpeton thalassium ATCC 35110, complete genomeNAD-dependent epimerase/dehydratase1e-0964.3
NC_007498:1774859:178196317819631782946984Pelobacter carbinolicus DSM 2380, complete genomecarbamoylphosphate synthase large subunit2e-0963.5
NC_011832:820658:8612698612698623241056Candidatus Methanosphaerula palustris E1-9c, complete genomeprotein of unknown function DUF2012e-0963.5
NC_012804:2017531:2044093204409320451421050Thermococcus gammatolerans EJ3, complete genomeCarbamoylphosphate synthase large subunit region, short form3e-0962.8
NC_015138:4905935:4915451491545149168241374Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeATP-grasp fold domain-containing protein4e-0962.4
NC_013202:1367447:138825913882591389215957Halomicrobium mukohataei DSM 12286, complete genomeprotein of unknown function DUF2011e-0860.5
NC_015437:1066014:1068397106839710716273231Selenomonas sputigena ATCC 35185 chromosome, complete genomecarbamoyl-phosphate synthase, large subunit4e-0859.3
NC_014633:713285:7198237198237230083186Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencecarbamoyl-phosphate synthase large subunit2e-0757
NC_009615:4425500:443098644309864431954969Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-0756.6
NC_009848:3190619:3199508319950832007881281Bacillus pumilus SAFR-032, complete genomecarbamoylphosphate synthase large subunit short form6e-0652
NC_009454:489954:4899544899544932053252Pelotomaculum thermopropionicum SI, complete genomecarbamoylphosphate synthase large subunit8e-0651.6