Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3299742 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3299742, End: 3300245, Length: 504

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015565:1511426:151628515162851516839555Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta2e-1994.7
NC_004557:2711702:271988127198812720438558Clostridium tetani E88, complete genomefumarate hydratase4e-1994
NC_009662:837500:845117845117845671555Nitratiruptor sp. SB155-2, complete genomefumarate/tartrate hydratase, beta subunit4e-1994
NC_007626:3393940:344079334407933441401609Magnetospirillum magneticum AMB-1, complete genomeTartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain7e-1889.7
NC_009454:1389974:140408114040811404635555Pelotomaculum thermopropionicum SI, complete genomefumarase C-terminal domain-containing protein2e-1788.2
NC_012115:1122905:113189411318941132448555Nautilia profundicola AmH, complete genomeC-terminal fumarate hydratase, class I2e-1788.2
NC_014935:342491:369109369109369666558Nitratifractor saLSUginis DSM 16511 chromosome, complete genomehydro-lyase, fe-s type, tartrate/fumarate subfamily, beta subunit2e-1788.2
NC_014328:4387303:441357444135744414140567Clostridium ljungdahlii ATCC 49587 chromosome, complete genomefumarate hydratase subunit beta3e-1787.8
NC_011830:4645453:466769946676994668256558Desulfitobacterium hafniense DCB-2, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit4e-1787
NC_014387:79808:911229112291685564Butyrivibrio proteoclasticus B316 chromosome 1, complete genomefumarate hydratase beta subunit FumB5e-1787
NC_017161:282500:306805306805307362558Hydrogenobacter thermophilus TK-6 chromosome, complete genomeFe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta8e-1786.3
NC_013799:282500:306815306815307372558Hydrogenobacter thermophilus TK-6, complete genomefumarate hydratase beta subunit8e-1786.3
NC_021150:3200959:322392932239293224537609Azotobacter vinelandii CA6, complete genomeL(+)-tartrate dehydratase subunit beta9e-1785.9
NC_012560:3200961:322393132239313224539609Azotobacter vinelandii DJ, complete genomeL(+)-tartrate dehydratase beta subunit protein9e-1785.9
NC_009633:3457185:347993934799393480496558Alkaliphilus metalliredigens QYMF chromosome, complete genometartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta2e-1685.1
NC_014378:525717:526575526575527108534Acetohalobium arabaticum DSM 5501 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit3e-1684.3
NC_011837:238160:270925270925271491567Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-1684.3
NC_009706:238160:270925270925271491567Clostridium kluyveri DSM 555 chromosome, complete genomeprotein FumB3e-1684.3
NC_015562:1189111:122629812262981226897600Methanotorris igneus Kol 5 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta4e-1684
NC_009698:3553365:355628835562883556842555Clostridium botulinum A str. Hall chromosome, complete genometartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta4e-1684
NC_019978:2036779:203762420376242038151528Halobacteroides halobius DSM 5150, complete genomehydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily5e-1683.6
NC_014410:51711:777237772378280558Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit1e-1582.4
NC_019970:35985:643006430064848549Thermoanaerobacterium thermosaccharolyticum M0795, complete genomehydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily1e-1582
NC_012440:1080675:108544010854401086003564Persephonella marina EX-H1, complete genomefumarate hydratase, class I1e-1582
NC_013790:1081757:109898810989881099518531Methanobrevibacter ruminantium M1 chromosome, complete genomefumarate hydratase FumA32e-1581.6
NC_011898:2907017:292343229234322923989558Clostridium cellulolyticum H10, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit3e-1580.9
NC_012438:565419:573117573117573680564Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomefumarate hydratase, class I3e-1580.9
NC_014376:6296:165621656217140579Clostridium saccharolyticum WM1 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit4e-1580.5
NC_007974:2048000:206919820691982069761564Ralstonia metallidurans CH34 chromosome 2, complete sequencehydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region5e-1580.5
NC_010730:627465:639509639509640072564Sulfurihydrogenibium sp. YO3AOP1, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit5e-1580.1
NC_015555:49842:780277802778584558Thermoanaerobacterium xylanolyticum LX-11 chromosome, completehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit5e-1580.1
NC_012781:4065:9844984410395552Eubacterium rectale ATCC 33656, complete genomefumarate hydratase subunit B1e-1479
NC_009802:1827138:184457018445701845130561Campylobacter concisus 13826, complete genomeL-cystine import ATP-binding protein TcyC4e-1477.4
NC_010001:1:108071080711355549Clostridium phytofermentans ISDg, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit3e-1477.4
NC_009328:448224:4482244482244497711548Geobacillus thermodenitrificans NG80-2 chromosome, complete genomefumarase5e-1477
NC_010525:1177154:119545011954501196055606Thermoproteus neutrophilus V24Sta, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit5e-1477
NC_015499:1640500:165739916573991657950552Thermodesulfobium narugense DSM 14796 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit9e-1476.3
NC_010718:2551000:256128725612872561847561Natranaerobius thermophilus JW/NM-WN-LF, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit1e-1375.9
NC_012590:2501593:251194025119402512581642Corynebacterium aurimucosum ATCC 700975, complete genomeL-tartrate dehydratase1e-1375.5
NC_009515:705911:728635728635729156522Methanobrevibacter smithii ATCC 35061, complete genomefumarate hydratase, class I3e-1374.7
NC_010320:1769486:178392317839231784483561Thermoanaerobacter sp. X514 chromosome, complete genometartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta3e-1374.7
NC_014538:73272:807578075781317561Thermoanaerobacter sp. X513 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta3e-1374.7
NC_011661:1332309:135689213568921357416525Dictyoglomus turgidum DSM 6724, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit3e-1374.3
NC_003869:74836:824298242982992564Thermoanaerobacter tengcongensis MB4, complete genomeTartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain4e-1374.3
NC_011274:793681:801965801965802510546Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hydro-lyase1e-1272.4
NC_011205:839425:849101849101849646546Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hydro-lyase1e-1272.4
NC_011083:862901:873157873157873702546Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-1272.4
NC_011149:779903:788593788593789138546Salmonella enterica subsp. enterica serovar Agona str. SL483,hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region1e-1272.4
NC_003197:815964:824918824918825463546Salmonella typhimurium LT2, complete genomefumarate hydratase1e-1272.4
NC_017243:424132:429518429518430048531Brachyspira intermedia PWS/A chromosome, complete genomefumarate hydratase1e-1272.4
NC_011294:781170:784071784071784616546Salmonella enterica subsp. enterica serovar Enteritidis strhydro-lyase1e-1272.4
NC_016810:819489:824174824174824719546Salmonella enterica subsp. enterica serovar Typhimurium strputative hydro-lyase1e-1272.4
NC_012125:793812:802118802118802663546Salmonella enterica subsp. enterica serovar Paratyphi C strainfumarate hydratase1e-1272.4
NC_006905:848000:853563853563854108546Salmonella enterica subsp. enterica serovar Choleraesuis strfumarate hydratase Class I anaerobic1e-1272.4
NC_011080:819103:829271829271829816546Salmonella enterica subsp. enterica serovar Newport str. SL254,fumarate hydratase I, beta subunit1e-1272.4
NC_016860:857500:863748863748864293546Salmonella enterica subsp. enterica serovar Typhimurium strhydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region1e-1272.4
NC_016857:819429:824174824174824719546Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region1e-1272.4
NC_016831:2209834:222064222206422221187546Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative hydro-lyase1e-1272.4
NC_016863:819478:825260825260825805546Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1fumarate hydratase1e-1272
NC_016856:819482:825260825260825805546Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sfumarate hydratase1e-1272
NC_015958:84270:968729687297432561Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta1e-1272
NC_012778:2997:112701127011821552Eubacterium eligens ATCC 27750, complete genomefumarate hydratase2e-1272
NC_003901:3698164:371652037165203717098579Methanosarcina mazei Go1, complete genomefumarate hydratase2e-1271.2
NC_020389:3106847:311262031126203113198579Methanosarcina mazei Tuc01, complete genomeFumarate hydratase class I, aerobic/L(+)-tartrate dehydratase beta subunit2e-1271.2
NC_017046:819414:824159824159824701543Salmonella enterica subsp. enterica serovar Typhimurium str. 798hydro-lyase6e-1270.1
NC_010102:2287934:229874022987402299282543Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1270.1
NC_014804:1354970:136900913690091369533525Thermococcus barophilus MP chromosome, complete genomefumarate hydratase class I aerobic9e-1269.3
NC_012225:1657248:167154616715461672076531Brachyspira hyodysenteriae WA1, complete genomefumarate hydratase9e-1269.3
NC_009975:1034144:105616710561671056742576Methanococcus maripaludis C6, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit1e-1169.3
NC_011297:1167615:117649811764981177022525Dictyoglomus thermophilum H-6-12, complete genomefumarate hydratase, beta subunit2e-1168.2
NC_013156:182896:207249207249207839591Methanocaldococcus fervens AG86, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit7e-1166.6
NC_003552:3092456:309667130966713097261591Methanosarcina acetivorans C2A, complete genomefumarate hydratase2e-1065.1
NC_014507:2276000:228573222857322286289558Methanoplanus petrolearius DSM 11571 chromosome, complete genomeFe-S type tartrate/fumarate subfamily hydro-lyase subunit beta3e-1064.3
NC_004556:1132354:1145975114597511474921518Xylella fastidiosa Temecula1, complete genomefumarate hydratase1e-0962.4
NC_006526:1303635:1321511132151113230341524Zymomonas mobilis subsp. mobilis ZM4, complete genomefumarate hydratase3e-0961.2
NC_018145:50237:5023750237517601524Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeFe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha3e-0960.8
NC_015672:699904:703133703133703711579Flexistipes sinusarabici DSM 4947 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta4e-0960.5
NC_011891:315182:320247320247320822576Anaeromyxobacter dehalogenans 2CP-1, complete genomeFe-S type hydro-lyase tartrate/fumarate beta region2e-0858.5
NC_011145:306623:311683311683312258576Anaeromyxobacter sp. K, complete genomeFe-S type hydro-lyase tartrate/fumarate beta region2e-0858.5
NC_019942:987134:103140610314061031978573Aciduliprofundum sp. MAR08-339, complete genomehydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily3e-0858.2
NC_014122:842560:852587852587853129543Methanocaldococcus infernus ME chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit3e-0857.8
NC_014222:1264000:126404812640481264647600Methanococcus voltae A3 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit6e-0856.6
NC_007760:308500:309179309179309748570Anaeromyxobacter dehalogenans 2CP-C, complete genomeFe-S type hydro-lyase tartrate/fumarate beta region9e-0856.2
NC_013939:913890:914353914353914937585Deferribacter desulfuricans SSM1, complete genomefumarate hydratase class I subunit beta9e-0856.2
NC_015320:1260344:128290212829021283528627Archaeoglobus veneficus SNP6 chromosome, complete genomehydro-lyase subunit beta8e-0856.2
NC_009712:669647:698224698224698787564Candidatus Methanoregula boonei 6A8, complete genometartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit2e-0755.5
CP002797:4411763:4411763441176344134091647Escherichia coli NA114, complete genomeFumarate hydratase class I2e-0755.1
NC_014923:5868000:5880453588045358820061554Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit3e-0754.3
NC_015675:6423000:6435124643512464366771554Mesorhizobium opportunistum WSM2075 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha3e-0754.3
NC_019973:5797000:5809413580941358109661554Mesorhizobium australicum WSM2073, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily3e-0754.3
NC_018691:2863659:2867498286749828690241527Alcanivorax dieselolei B5 chromosome, complete genomeFumarate hydratase I, alpha subunit domain protein3e-0754.3
NC_014153:2187409:2205868220586822074031536Thiomonas intermedia K12 chromosome, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit3e-0754.3
NC_000961:1481685:148168514816851482185501Pyrococcus horikoshii OT3, complete genomefumarate hydratase8e-0753.1
NC_010067:3247169:3250028325002832516741647Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0652.8
NC_010524:3391075:3391075339107533926011527Leptothrix cholodnii SP-6, complete genomehydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit1e-0652.4
NC_009078:510525:5105255105255120601536Burkholderia pseudomallei 1106a chromosome II, complete sequencefumarate hydratase, class I3e-0651.2
NC_014910:1200605:1218907121890712204661560Alicycliphilus denitrificans BC chromosome, complete genomehydro-lyase, fe-s type, tartrate/fumarate subfamily, alpha subunit6e-0650.1
NC_011565:620801:6544006544006560281629Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,fumarate hydratase8e-0649.7
NC_012779:2281700:2284344228434422859901647Edwardsiella ictaluri 93-146, complete genomefumarate hydratase class I, anaerobic9e-0649.7
NC_009659:997779:99938199938110009191539Janthinobacterium sp. Marseille chromosome, complete genomefumarate hydratase, class I9e-0649.7